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Lj4g3v1787120.1

Overview

Field Value
Gene ID Lj4g3v1787120
Transcript ID Lj4g3v1787120.1
Lotus japonicus genome version MG20 v3.0
Description MYB transcription factor MYB109 [Glycine max] gi|351727817|ref|NP_001235894.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24078:SF261
1 80 80 2.20E-151 –
PANTHER
PTHR24078
1 80 80 2.20E-151 –
ProSiteProfiles
PS51293
3 61 59 7.64
IPR017884
SMART
SM00717
4 60 57 9.80E-06
IPR001005
SUPERFAMILY
SSF46689
6 62 57 5.46E-09
IPR009057
Gene3D
G3DSA:1.10.10.60
7 59 53 4.90E-05
IPR009057
CDD
cd00167
8 58 51 2.07E-05 –
Pfam
PF00249
8 56 49 3.90E-08
IPR001005
PANTHER
PTHR24078:SF261
99 309 211 2.20E-151 –
PANTHER
PTHR24078
99 309 211 2.20E-151 –
MobiDBLite
mobidb-lite
112 135 24 – –
ProSiteProfiles
PS51294
129 185 57 17.097
IPR017930
SUPERFAMILY
SSF46689
130 186 57 3.80E-17
IPR009057
TIGRFAM
TIGR01557
132 183 52 1.50E-17
IPR006447
SMART
SM00717
133 183 51 2.30E-10
IPR001005
Gene3D
G3DSA:1.10.10.60
134 179 46 6.70E-11
IPR009057
Pfam
PF00249
136 180 45 7.70E-11
IPR001005
CDD
cd00167
136 181 46 1.09E-09 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj4g3v1787120.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v1787120.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.