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Lj4g3v1881960.1

Overview

Field Value
Gene ID Lj4g3v1881960
Transcript ID Lj4g3v1881960.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: vesicle-associated membrane protein 713-like [Cicer arietinum] gi|502151469|ref|XP_004508456.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR21136
1 195 195 4.90E-104 –
PANTHER
PTHR21136:SF104
1 195 195 4.90E-104 –
Gene3D
G3DSA:3.30.450.50
1 112 112 2.60E-32
IPR010908
SUPERFAMILY
SSF64356
3 122 120 6.71E-28
IPR011012
ProSiteProfiles
PS50859
7 115 109 29.291
IPR010908
SMART
SM01270
28 114 87 2.00E-24
IPR010908
Pfam
PF13774
29 112 84 1.30E-23
IPR010908
Gene3D
G3DSA:1.10.3840.10
113 194 82 1.80E-27
IPR001388
SUPERFAMILY
SSF58038
124 191 68 2.88E-19 –
Pfam
PF00957
128 194 67 3.30E-22
IPR001388
CDD
cd15843
129 188 60 7.26E-19 –
ProSiteProfiles
PS50892
130 190 61 16.575
IPR001388
ProSitePatterns
PS00417
148 167 20 –
IPR001388

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016021
Cellular component Integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Subterm of
GO:0016192
Biological process Vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj4g3v1881960.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v1881960.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.