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| Field | Value |
|---|---|
| Gene ID | Lj4g3v1983600 |
| Transcript ID | Lj4g3v1983600.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable cyclic nucleotide-gated ion channel 5-like isoform X1 [Cicer arietinum] gi|502149997|ref|XP_004507740.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 299 | 299 | 0 | – | |
| PANTHER | 1 | 299 | 299 | 0 | – | |
| Phobius | 1 | 104 | 104 | – | – | |
| SUPERFAMILY | 101 | 299 | 199 | 2.62E-34 | – | |
| Phobius | 105 | 129 | 25 | – | – | |
| Pfam | 109 | 431 | 323 | 3.50E-34 | ||
| TMHMM | 112 | 134 | 23 | – | – | |
| Phobius | 130 | 148 | 19 | – | – | |
| Gene3D | 141 | 298 | 158 | 9.60E-23 | – | |
| Phobius | 149 | 169 | 21 | – | – | |
| PRINTS | 165 | 174 | 10 | 7.20E-05 | ||
| Phobius | 170 | 200 | 31 | – | – | |
| Phobius | 201 | 221 | 21 | – | – | |
| TMHMM | 201 | 218 | 18 | – | – | |
| Phobius | 222 | 232 | 11 | – | – | |
| Phobius | 233 | 252 | 20 | – | – | |
| Phobius | 253 | 272 | 20 | – | – | |
| Phobius | 273 | 294 | 22 | – | – | |
| TMHMM | 273 | 295 | 23 | – | – | |
| PRINTS | 282 | 292 | 11 | 7.20E-05 | ||
| Phobius | 295 | 400 | 106 | – | – | |
| PANTHER | 347 | 653 | 307 | 0 | – | |
| PANTHER | 347 | 653 | 307 | 0 | – | |
| Gene3D | 367 | 427 | 61 | 9.60E-23 | – | |
| SUPERFAMILY | 367 | 427 | 61 | 2.62E-34 | – | |
| PRINTS | 400 | 411 | 12 | 7.20E-05 | ||
| Phobius | 401 | 419 | 19 | – | – | |
| TMHMM | 401 | 423 | 23 | – | – | |
| PRINTS | 418 | 427 | 10 | 7.20E-05 | ||
| Phobius | 420 | 653 | 234 | – | – | |
| SUPERFAMILY | 434 | 625 | 192 | 1.45E-34 | ||
| Gene3D | 437 | 496 | 60 | 1.10E-11 | – | |
| PRINTS | 468 | 475 | 8 | 7.20E-05 | ||
| Gene3D | 503 | 621 | 119 | 2.30E-28 | ||
| SMART | 505 | 636 | 132 | 1.90E-13 | ||
| ProSiteProfiles | 505 | 589 | 85 | 13.939 | ||
| CDD | 505 | 636 | 132 | 6.41E-19 | – | |
| Pfam | 526 | 615 | 90 | 2.90E-08 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ion channel activity | Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size). | ||
| Molecular function | Voltage-gated potassium channel activity | Enables the transmembrane transfer of a potassium ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. | ||
| Biological process | Ion transport | The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Biological process | Potassium ion transport | The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj4g3v1983600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v1983600.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.