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Lj4g3v2020440.1

Overview

Field Value
Gene ID Lj4g3v2020440
Transcript ID Lj4g3v2020440.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: UDP-glucuronate 4-epimerase 1-like [Glycine max] gi|356562525|ref|XP_003549520.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 37 37 – –
TMHMM
TMhelix
28 50 23 – –
Phobius
TRANSMEMBRANE
38 55 18 – –
Phobius
CYTOPLASMIC_DOMAIN
56 431 376 – –
SUPERFAMILY
SSF51735
87 422 336 7.83E-81
IPR016040
Gene3D
G3DSA:3.40.50.720
89 273 185 3.80E-49
IPR016040
PANTHER
PTHR10366:SF459
92 429 338 2.40E-246 –
PANTHER
PTHR10366
92 429 338 2.40E-246 –
Pfam
PF01370
93 327 235 1.90E-48
IPR001509
PRINTS
PR01713
119 135 17 2.20E-29
IPR008089
Gene3D
G3DSA:3.90.25.10
274 422 149 7.00E-29 –
PRINTS
PR01713
309 324 16 2.20E-29
IPR008089
PRINTS
PR01713
344 359 16 2.20E-29
IPR008089
PRINTS
PR01713
384 401 18 2.20E-29
IPR008089

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0050662
Molecular function Coenzyme binding Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj4g3v2020440.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2020440.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.