Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | Lj4g3v2133900 |
| Transcript ID | Lj4g3v2133900.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: cadmium/zinc-transporting ATPase 3-like [Glycine max] gi|356550732|ref|XP_003543738.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 94 | 94 | – | – | |
| Gene3D | 8 | 77 | 70 | 3.40E-04 | – | |
| SUPERFAMILY | 10 | 78 | 69 | 1.82E-07 | ||
| PANTHER | 12 | 538 | 527 | 4.70E-214 | – | |
| PANTHER | 12 | 538 | 527 | 4.70E-214 | – | |
| ProSiteProfiles | 13 | 79 | 67 | 12.367 | ||
| Phobius | 95 | 112 | 18 | – | – | |
| TMHMM | 110 | 132 | 23 | – | – | |
| Phobius | 113 | 117 | 5 | – | – | |
| Phobius | 118 | 136 | 19 | – | – | |
| Phobius | 137 | 140 | 4 | – | – | |
| Phobius | 141 | 159 | 19 | – | – | |
| SUPERFAMILY | 145 | 199 | 55 | 2.62E-17 | – | |
| TIGRFAM | 145 | 485 | 341 | 4.70E-97 | – | |
| Gene3D | 145 | 294 | 150 | 2.10E-24 | ||
| TIGRFAM | 145 | 537 | 393 | 5.40E-119 | ||
| TMHMM | 147 | 178 | 32 | – | – | |
| Phobius | 160 | 164 | 5 | – | – | |
| Phobius | 165 | 184 | 20 | – | – | |
| Pfam | 167 | 385 | 219 | 9.20E-56 | ||
| TIGRFAM | 168 | 537 | 370 | 4.10E-38 | ||
| Phobius | 185 | 312 | 128 | – | – | |
| SUPERFAMILY | 208 | 293 | 86 | 7.98E-20 | – | |
| PRINTS | 243 | 257 | 15 | 3.80E-05 | – | |
| SUPERFAMILY | 294 | 388 | 95 | 2.62E-17 | – | |
| TMHMM | 310 | 332 | 23 | – | – | |
| Phobius | 313 | 332 | 20 | – | – | |
| Phobius | 333 | 343 | 11 | – | – | |
| Phobius | 344 | 368 | 25 | – | – | |
| TMHMM | 347 | 369 | 23 | – | – | |
| Gene3D | 369 | 409 | 41 | 3.50E-09 | ||
| Phobius | 369 | 538 | 170 | – | – | |
| Pfam | 390 | 538 | 149 | 2.50E-13 | – | |
| PRINTS | 394 | 408 | 15 | 3.80E-05 | – | |
| ProSitePatterns | 396 | 402 | 7 | – | ||
| SUPERFAMILY | 396 | 522 | 127 | 7.52E-18 | ||
| Gene3D | 410 | 520 | 111 | 3.00E-07 | ||
| Gene3D | 521 | 532 | 12 | 3.50E-09 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Biological process | Cation transport | The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Cation-transporting ATPase activity | Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + cation(out) = ADP + phosphate + cation(in). | ||
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of Lj4g3v2133900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…
A list of the top 25 highly co-expressed genes of Lj4g3v2133900.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.