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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2179250 |
| Transcript ID | Lj4g3v2179250.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | nuclear transcription factor Y subunit A-3 [Arachis hypogaea] gi|469609862|gb|AGH62008.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 183 | 183 | 2.60E-82 | – | |
| PANTHER | 1 | 183 | 183 | 2.60E-82 | ||
| SMART | 41 | 102 | 62 | 1.10E-34 | ||
| ProSiteProfiles | 42 | 102 | 61 | 36.363 | ||
| PRINTS | 45 | 67 | 23 | 3.40E-24 | ||
| Pfam | 45 | 99 | 55 | 3.70E-27 | ||
| ProSitePatterns | 47 | 67 | 21 | – | ||
| PRINTS | 76 | 99 | 24 | 3.40E-24 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Cellular component | CCAAT-binding factor complex | A heteromeric transcription factor complex that binds to the CCAAT-box upstream of promoters; functions as both an activator and a repressor, depending on its interacting cofactors. Typically trimeric consisting of NFYA, NFYB and NFYC subunits. In Saccharomyces, it activates the transcription of genes in response to growth in a nonfermentable carbon source and consists of four known subunits: HAP2, HAP3, HAP4 and HAP5. |
Expression pattern of Lj4g3v2179250.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2179250.1, powered by CORGI.
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