Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

GO:0016602

Overview

Field Value
Namespace Cellular component
Short description CCAAT-binding factor complex
Full defintion A heteromeric transcription factor complex that binds to the CCAAT-box upstream of promoters; functions as both an activator and a repressor, depending on its interacting cofactors. Typically trimeric consisting of NFYA, NFYB and NFYC subunits. In Saccharomyces, it activates the transcription of genes in response to growth in a nonfermentable carbon source and consists of four known subunits: HAP2, HAP3, HAP4 and HAP5.
Subterm of

Relationships

The relationship of GO:0016602 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

A force layout showing the ancestor tree for GO:0016602, and its immediate children. If you wish to explore the tree dynamically, please use the GO Explorer.

  • Drag and drop nodes to manually position (i.e. fix) them
  • Double click on a node to unfix the node
  • Press Alt and double click to visit the page containing further details of a GO term
  • Right clicking on a node will reveal a context menu

Controls

Force layout

Every force layout is different—we have picked a set of parameters which suits most GO ancestor tree chart well. If you mess something up—don't worry: hitting the "reset view" button above will reset the chart to its default layout.

Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
GOCbhm
PMID
Cloning of yeast HAP5: a novel subunit of a heterotrimeric complex required for CCAAT binding.
Genes Dev. ; 9 (1): 47–58.PMID: 7828851

The CCAAT-binding factor is a conserved heteromeric transcription factor that binds to CCAAT box-containing upstream activation sites (UASs) within the promoters of numerous eukaryotic genes. The CCAAT-binding factor of Saccharomyces cerevisiae activates the transcription of these genes in response to growth in a nonfermentable carbon source. Previous studies have demonstrated that the HAP2, HAP3, and HAP4 subunits of the yeast CCAAT-binding factor are required for the transcriptional activation of genes containing a CCAAT box. Using the two-hybrid screening method, we have identified an additional component of the CCAAT-binding factor. We present the identification and characterization of a novel gene, HAP5, that encodes an additional subunit of the CCAAT-binding factor required for the assembly and DNA-binding activity of the complex. In a hap5 mutant, we show that CCAAT-binding activity is abolished in vitro. Furthermore, we demonstrate that purified recombinant HAP2, HAP3, and HAP5 are able to reconstitute CCAAT-binding activity in mobility shift analysis. These data suggest that the HAP2/3/5 heterotrimer represents a unique DNA-binding factor in which all three subunits of the complex are absolutely required for DNA-binding activity.

Associated Lotus transcripts 17

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1 [Cicer arietinum] gi|502165192|ref|XP_004513462.1| 2
2
PREDICTED: nuclear transcription factor Y subunit A-1-like [Glycine max] gi|356566267|ref|XP_003551355.1| 2
PREDICTED: nuclear transcription factor Y subunit A-3-like [Cicer arietinum] gi|502081419|ref|XP_004486861.1| 2
PREDICTED: nuclear transcription factor Y subunit A-3-like [Cicer arietinum] gi|502081419|ref|XP_004486861.1| 2
PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1 [Cicer arietinum] gi|502156346|ref|XP_004510428.1| 2
Nuclear transcription factor Y subunit A-3 [Arachis hypogaea] gi|469609862|gb|AGH62008.1| 2
PREDICTED: nuclear transcription factor Y subunit A-1-like [Glycine max] gi|356566267|ref|XP_003551355.1| 2
PREDICTED: nuclear transcription factor Y subunit C-9-like [Glycine max] gi|356528546|ref|XP_003532862.1| 3
Nuclear transcription factor Y subunit; TAIR: AT5G12840.2 nuclear factor Y, subunit A1; Swiss-Prot: sp|Q9LXV5|NFYA1_ARATH Nuclear transcription factor Y subunit A-1; TrEMBL-Plants: tr|K7MQE5|K7MQE5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0011200 2
Nuclear transcription factor Y subunit; TAIR: AT1G17590.1 nuclear factor Y, subunit A8; Swiss-Prot: sp|Q93ZH2|NFYA3_ARATH Nuclear transcription factor Y subunit A-3; TrEMBL-Plants: tr|G7IS22|G7IS22_MEDTR CCAAT-binding transcription factor; Found in the gene: LotjaGi3g1v0029300 2
Nuclear transcription factor Y subunit; TAIR: AT1G17590.1 nuclear factor Y, subunit A8; Swiss-Prot: sp|Q9LNP6|NFYA8_ARATH Nuclear transcription factor Y subunit A-8; TrEMBL-Plants: tr|G7IS22|G7IS22_MEDTR CCAAT-binding transcription factor; Found in the gene: LotjaGi3g1v0029300 2
Nuclear transcription factor Y subunit; TAIR: AT1G72830.1 nuclear factor Y, subunit A3; Swiss-Prot: sp|Q93ZH2|NFYA3_ARATH Nuclear transcription factor Y subunit A-3; TrEMBL-Plants: tr|A0A151T9E0|A0A151T9E0_CAJCA Nuclear transcription factor Y subunit A-3; Found in the gene: LotjaGi3g1v0417600 2
Nuclear transcription factor Y subunit; TAIR: AT1G72830.1 nuclear factor Y, subunit A3; Swiss-Prot: sp|Q93ZH2|NFYA3_ARATH Nuclear transcription factor Y subunit A-3; TrEMBL-Plants: tr|A0A151T9E0|A0A151T9E0_CAJCA Nuclear transcription factor Y subunit A-3; Found in the gene: LotjaGi3g1v0417600 2
Nuclear transcription factor Y subunit; TAIR: AT1G30500.2 nuclear factor Y, subunit A7; Swiss-Prot: sp|Q84JP1|NFYA7_ARATH Nuclear transcription factor Y subunit A-7; TrEMBL-Plants: tr|C6TCG7|C6TCG7_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0385700 2
Nuclear transcription factor Y subunit; TAIR: AT5G12840.2 nuclear factor Y, subunit A1; Swiss-Prot: sp|Q9LXV5|NFYA1_ARATH Nuclear transcription factor Y subunit A-1; TrEMBL-Plants: tr|A0A0B2REF6|A0A0B2REF6_GLYSO Nuclear transcription factor Y subunit A-1; Found in the gene: LotjaGi6g1v0135700 2
Nuclear transcription factor Y subunit; TAIR: AT1G54160.1 nuclear factor Y, subunit A5; Swiss-Prot: sp|Q9SYH4|NFYA5_ARATH Nuclear transcription factor Y subunit A-5; TrEMBL-Plants: tr|A0A0B2PSG7|A0A0B2PSG7_GLYSO Nuclear transcription factor Y subunit A-3; Found in the gene: LotjaGi6g1v0227300 2

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
Cellular component CCAAT-binding factor complex 1 5.88