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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2249070 |
| Transcript ID | Lj4g3v2249070.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: novel plant SNARE 13-like [Glycine max] gi|356565471|ref|XP_003550963.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 216 | 216 | – | – | |
| PANTHER | 7 | 253 | 247 | 2.30E-150 | – | |
| PANTHER | 7 | 253 | 247 | 2.30E-150 | – | |
| Coils | 45 | 72 | 28 | – | – | |
| SUPERFAMILY | 134 | 208 | 75 | 1.13E-16 | – | |
| Gene3D | 135 | 208 | 74 | 8.00E-17 | – | |
| SMART | 140 | 207 | 68 | 5.40E-06 | ||
| CDD | 144 | 206 | 63 | 2.41E-17 | – | |
| ProSiteProfiles | 145 | 207 | 63 | 10.43 | ||
| Pfam | 153 | 232 | 80 | 1.70E-07 | ||
| TMHMM | 217 | 239 | 23 | – | – | |
| Phobius | 217 | 237 | 21 | – | – | |
| Phobius | 238 | 262 | 25 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | SNAP receptor activity | Acting as a marker to identify a membrane and interacting selectively with one or more SNAREs on another membrane to mediate membrane fusion. | ||
| Biological process | Retrograde vesicle-mediated transport, Golgi to ER | The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG. |
Expression pattern of Lj4g3v2249070.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2249070.1, powered by CORGI.
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