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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2267380 |
| Transcript ID | Lj4g3v2267380.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic-like [Cicer arietinum] gi|502150841|ref|XP_004508150.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 60 | 85 | 26 | – | – | |
| PANTHER | 139 | 345 | 207 | 1.30E-186 | – | |
| PANTHER | 139 | 345 | 207 | 1.30E-186 | – | |
| ProSiteProfiles | 147 | 490 | 344 | 37.556 | ||
| SMART | 147 | 180 | 34 | 410 | ||
| Gene3D | 151 | 264 | 114 | 2.10E-18 | ||
| SUPERFAMILY | 161 | 397 | 237 | 1.88E-38 | ||
| ProSiteProfiles | 181 | 214 | 34 | 6.195 | ||
| SMART | 181 | 214 | 34 | 46 | ||
| SMART | 195 | 228 | 34 | 49 | ||
| SMART | 216 | 249 | 34 | 21 | ||
| ProSiteProfiles | 216 | 249 | 34 | 5.281 | ||
| SMART | 230 | 262 | 33 | 28 | ||
| SMART | 250 | 283 | 34 | 13 | ||
| SMART | 264 | 296 | 33 | 0.24 | ||
| Gene3D | 265 | 342 | 78 | 3.60E-15 | ||
| ProSiteProfiles | 284 | 317 | 34 | 8.142 | ||
| SMART | 284 | 317 | 34 | 22 | ||
| Pfam | 290 | 351 | 62 | 0.0042 | – | |
| SMART | 298 | 330 | 33 | 4.2 | ||
| SMART | 318 | 351 | 34 | 16 | ||
| ProSiteProfiles | 318 | 351 | 34 | 8.142 | ||
| SMART | 332 | 364 | 33 | 25 | ||
| Gene3D | 343 | 506 | 164 | 2.10E-25 | ||
| SUPERFAMILY | 352 | 503 | 152 | 9.57E-18 | ||
| SMART | 366 | 398 | 33 | 1300 | ||
| PANTHER | 367 | 547 | 181 | 1.30E-186 | – | |
| PANTHER | 367 | 547 | 181 | 1.30E-186 | – | |
| ProSiteProfiles | 386 | 419 | 34 | 6.372 | ||
| SMART | 386 | 419 | 34 | 50 | ||
| SMART | 400 | 432 | 33 | 16 | ||
| SMART | 420 | 453 | 34 | 17 | ||
| ProSiteProfiles | 420 | 453 | 34 | 8.113 | ||
| Pfam | 423 | 452 | 30 | 0.2 | ||
| SMART | 434 | 469 | 36 | 79 | ||
| SMART | 457 | 490 | 34 | 80 | ||
| ProSiteProfiles | 457 | 490 | 34 | 6.136 | ||
| SMART | 471 | 503 | 33 | 8.4 | ||
| Gene3D | 538 | 555 | 18 | 2.10E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. |
Expression pattern of Lj4g3v2267380.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2267380.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.