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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2267380 |
| Transcript ID | Lj4g3v2267380.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: psbB mRNA maturation factor Mbb1, chloroplastic-like [Cicer arietinum] gi|502150841|ref|XP_004508150.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 2 | 230 | 229 | 5.31E-38 | ||
| PANTHER | 6 | 179 | 174 | 3.60E-160 | – | |
| PANTHER | 6 | 179 | 174 | 3.60E-160 | – | |
| Gene3D | 12 | 98 | 87 | 1.90E-14 | ||
| ProSiteProfiles | 15 | 324 | 310 | 35.434 | ||
| ProSiteProfiles | 15 | 48 | 34 | 6.195 | ||
| SMART | 15 | 48 | 34 | 46 | ||
| SMART | 29 | 62 | 34 | 49 | ||
| ProSiteProfiles | 50 | 83 | 34 | 5.281 | ||
| SMART | 50 | 83 | 34 | 21 | ||
| Pfam | 62 | 104 | 43 | 0.011 | – | |
| SMART | 64 | 96 | 33 | 28 | ||
| SMART | 84 | 117 | 34 | 13 | ||
| SMART | 98 | 130 | 33 | 0.24 | ||
| Gene3D | 99 | 176 | 78 | 1.40E-15 | ||
| ProSiteProfiles | 118 | 151 | 34 | 8.142 | ||
| SMART | 118 | 151 | 34 | 22 | ||
| Pfam | 124 | 185 | 62 | 0.002 | – | |
| SMART | 132 | 164 | 33 | 4.2 | ||
| ProSiteProfiles | 152 | 185 | 34 | 8.142 | ||
| SMART | 152 | 185 | 34 | 16 | ||
| SMART | 166 | 198 | 33 | 25 | ||
| Gene3D | 177 | 345 | 169 | 1.50E-24 | ||
| SUPERFAMILY | 187 | 336 | 150 | 8.44E-18 | ||
| SMART | 200 | 232 | 33 | 1300 | ||
| PANTHER | 201 | 353 | 153 | 3.60E-160 | – | |
| PANTHER | 201 | 353 | 153 | 3.60E-160 | – | |
| SMART | 220 | 253 | 34 | 50 | ||
| ProSiteProfiles | 220 | 253 | 34 | 6.372 | ||
| SMART | 234 | 266 | 33 | 16 | ||
| ProSiteProfiles | 254 | 287 | 34 | 8.113 | ||
| SMART | 254 | 287 | 34 | 17 | ||
| Pfam | 257 | 286 | 30 | 0.095 | ||
| SMART | 268 | 303 | 36 | 79 | ||
| ProSiteProfiles | 291 | 324 | 34 | 6.136 | ||
| SMART | 291 | 324 | 34 | 80 | ||
| SMART | 305 | 337 | 33 | 8.4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. |
Expression pattern of Lj4g3v2267380.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2267380.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.