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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2478450 |
| Transcript ID | Lj4g3v2478450.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At2g37230-like [Cicer arietinum] gi|502086490|ref|XP_004488235.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 23 | 64 | 42 | – | – | |
| PANTHER | 25 | 592 | 568 | 0 | – | |
| PANTHER | 25 | 592 | 568 | 0 | – | |
| SUPERFAMILY | 138 | 262 | 125 | 4.55E-07 | ||
| ProSiteProfiles | 162 | 192 | 31 | 8.407 | ||
| Pfam | 165 | 187 | 23 | 0.092 | ||
| Gene3D | 173 | 326 | 154 | 7.10E-04 | ||
| ProSiteProfiles | 193 | 227 | 35 | 9.273 | ||
| Pfam | 194 | 239 | 46 | 7.00E-08 | ||
| ProSiteProfiles | 228 | 262 | 35 | 10.172 | ||
| TIGRFAM | 230 | 264 | 35 | 1.70E-04 | ||
| Pfam | 258 | 291 | 34 | 3.20E-11 | ||
| ProSiteProfiles | 263 | 297 | 35 | 13.285 | ||
| TIGRFAM | 265 | 299 | 35 | 2.00E-08 | ||
| SUPERFAMILY | 297 | 434 | 138 | 4.55E-07 | ||
| Pfam | 297 | 346 | 50 | 6.50E-18 | ||
| ProSiteProfiles | 298 | 332 | 35 | 13.987 | ||
| TIGRFAM | 300 | 334 | 35 | 6.20E-12 | ||
| ProSiteProfiles | 333 | 367 | 35 | 10.249 | ||
| Gene3D | 347 | 606 | 260 | 1.60E-15 | ||
| ProSiteProfiles | 369 | 403 | 35 | 8.089 | ||
| SUPERFAMILY | 371 | 575 | 205 | 1.70E-09 | – | |
| Pfam | 376 | 399 | 24 | 0.74 | ||
| ProSiteProfiles | 404 | 438 | 35 | 8.133 | ||
| Pfam | 408 | 436 | 29 | 0.18 | ||
| ProSiteProfiles | 447 | 477 | 31 | 8.616 | ||
| Pfam | 450 | 479 | 30 | 9.30E-04 | ||
| TIGRFAM | 450 | 479 | 30 | 5.90E-05 | ||
| ProSiteProfiles | 481 | 515 | 35 | 10.282 | ||
| Pfam | 484 | 513 | 30 | 0.0022 | ||
| TIGRFAM | 484 | 516 | 33 | 0.0012 | ||
| ProSiteProfiles | 516 | 550 | 35 | 10.49 | ||
| TIGRFAM | 519 | 550 | 32 | 4.40E-04 | ||
| Pfam | 519 | 547 | 29 | 0.093 | ||
| ProSiteProfiles | 551 | 585 | 35 | 8.868 | ||
| TIGRFAM | 554 | 584 | 31 | 0.003 | ||
| Pfam | 555 | 583 | 29 | 0.51 | ||
| ProSiteProfiles | 586 | 620 | 35 | 6.917 | ||
| ProSiteProfiles | 653 | 688 | 36 | 5.7 | ||
| MobiDBLite | 717 | 736 | 20 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj4g3v2478450.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2478450.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.