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Lj4g3v2511690.2

Overview

Field Value
Gene ID Lj4g3v2511690
Transcript ID Lj4g3v2511690.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description RING finger protein [Medicago truncatula] gi|357463141|ref|XP_003601852.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 51 51 – –
PANTHER
PTHR15315:SF35
39 256 218 1.80E-157 –
PANTHER
PTHR15315
39 256 218 1.80E-157 –
Phobius
TRANSMEMBRANE
52 71 20 – –
Phobius
CYTOPLASMIC_DOMAIN
72 256 185 – –
Gene3D
G3DSA:3.30.40.10
150 204 55 6.30E-13
IPR013083
SUPERFAMILY
SSF57850
151 202 52 6.63E-11 –
Pfam
PF13639
158 198 41 1.90E-07
IPR001841
CDD
cd00162
159 201 43 2.50E-07 –
ProSiteProfiles
PS50089
160 198 39 11.766
IPR001841
SMART
SM00184
160 197 38 8.90E-04
IPR001841
ProSitePatterns
PS00518
175 184 10 –
IPR017907

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj4g3v2511690.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2511690.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.