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Lj4g3v2513900.1

Overview

Field Value
Gene ID Lj4g3v2513900
Transcript ID Lj4g3v2513900.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: signal recognition particle 72 kDa protein-like [Glycine max] gi|356525126|ref|XP_003531178.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF038922
10 662 653 1.60E-161
IPR026270
PANTHER
PTHR14094
11 659 649 2.50E-244
IPR026270
PANTHER
PTHR14094:SF9
11 659 649 2.50E-244 –
SUPERFAMILY
SSF48452
29 149 121 2.28E-10
IPR011990
Gene3D
G3DSA:1.25.40.10
29 53 25 1.50E-09
IPR011990
Pfam
PF17004
56 153 98 1.70E-17
IPR031545
Gene3D
G3DSA:1.25.40.10
85 244 160 1.50E-09
IPR011990
SUPERFAMILY
SSF48452
195 257 63 2.28E-10
IPR011990
SUPERFAMILY
SSF48452
232 263 32 1.16E-07
IPR011990
Gene3D
G3DSA:1.25.40.10
245 268 24 2.90E-09
IPR011990
Gene3D
G3DSA:1.25.40.10
316 483 168 2.90E-09
IPR011990
SUPERFAMILY
SSF48452
317 485 169 1.16E-07
IPR011990
Pfam
PF08492
543 597 55 1.30E-16
IPR013699
MobiDBLite
mobidb-lite
547 662 116 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0006614
Biological process SRP-dependent cotranslational protein targeting to membrane The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.
Subterm of
GO:0008312
Molecular function 7S RNA binding Interacting selectively and non-covalently with 7S RNA, the RNA component of the signal recognition particle (SRP).
Subterm of
GO:0048500
Cellular component Signal recognition particle A complex of protein and RNA which facilitates translocation of proteins across membranes.
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj4g3v2513900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2513900.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.