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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2576110 |
| Transcript ID | Lj4g3v2576110.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g27270-like [Glycine max] gi|356528278|ref|XP_003532731.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 188 | 183 | 1.50E-256 | – | |
| PANTHER | 6 | 188 | 183 | 1.50E-256 | – | |
| ProSiteProfiles | 13 | 47 | 35 | 9.58 | ||
| Pfam | 13 | 61 | 49 | 5.30E-10 | ||
| TIGRFAM | 16 | 49 | 34 | 4.50E-04 | ||
| ProSiteProfiles | 48 | 82 | 35 | 11.203 | ||
| TIGRFAM | 50 | 82 | 33 | 1.50E-06 | ||
| Pfam | 82 | 127 | 46 | 4.40E-10 | ||
| ProSiteProfiles | 83 | 117 | 35 | 11.575 | ||
| SUPERFAMILY | 85 | 217 | 133 | 1.16E-06 | ||
| TIGRFAM | 85 | 118 | 34 | 1.70E-05 | ||
| ProSiteProfiles | 118 | 152 | 35 | 8.517 | ||
| TIGRFAM | 120 | 153 | 34 | 7.40E-04 | ||
| Gene3D | 125 | 202 | 78 | 3.40E-06 | ||
| ProSiteProfiles | 153 | 187 | 35 | 9.536 | ||
| Pfam | 155 | 184 | 30 | 0.001 | ||
| ProSiteProfiles | 188 | 222 | 35 | 7.169 | ||
| Pfam | 195 | 218 | 24 | 0.78 | ||
| Gene3D | 203 | 320 | 118 | 4.10E-04 | ||
| ProSiteProfiles | 257 | 291 | 35 | 6.73 | ||
| ProSiteProfiles | 292 | 326 | 35 | 8.846 | ||
| Pfam | 296 | 322 | 27 | 0.054 | ||
| ProSiteProfiles | 429 | 459 | 31 | 6.489 | ||
| Gene3D | 440 | 560 | 121 | 3.00E-09 | ||
| SUPERFAMILY | 440 | 532 | 93 | 2.73E-10 | ||
| ProSiteProfiles | 463 | 497 | 35 | 10.358 | ||
| PANTHER | 464 | 483 | 20 | 1.50E-256 | – | |
| PANTHER | 464 | 483 | 20 | 1.50E-256 | – | |
| Pfam | 467 | 494 | 28 | 1.30E-04 | ||
| TIGRFAM | 467 | 494 | 28 | 5.20E-04 | ||
| ProSiteProfiles | 498 | 532 | 35 | 6.182 | ||
| PANTHER | 532 | 818 | 287 | 1.50E-256 | – | |
| PANTHER | 532 | 818 | 287 | 1.50E-256 | – | |
| Pfam | 533 | 579 | 47 | 1.10E-08 | ||
| ProSiteProfiles | 533 | 567 | 35 | 9.745 | ||
| TIGRFAM | 535 | 565 | 31 | 6.90E-04 | ||
| ProSiteProfiles | 568 | 602 | 35 | 9.767 | ||
| SUPERFAMILY | 569 | 630 | 62 | 2.73E-10 | ||
| Gene3D | 570 | 798 | 229 | 8.60E-09 | ||
| TIGRFAM | 571 | 603 | 33 | 1.10E-05 | ||
| ProSiteProfiles | 603 | 637 | 35 | 11.729 | ||
| TIGRFAM | 607 | 637 | 31 | 1.40E-05 | ||
| Pfam | 607 | 635 | 29 | 1.90E-04 | ||
| Pfam | 638 | 685 | 48 | 3.50E-12 | ||
| ProSiteProfiles | 638 | 672 | 35 | 11.466 | ||
| TIGRFAM | 640 | 674 | 35 | 2.70E-09 | ||
| ProSiteProfiles | 673 | 707 | 35 | 11.17 | ||
| TIGRFAM | 675 | 709 | 35 | 3.70E-04 | ||
| Pfam | 703 | 734 | 32 | 4.00E-06 | ||
| ProSiteProfiles | 708 | 742 | 35 | 10.742 | ||
| TIGRFAM | 712 | 743 | 32 | 1.90E-06 | ||
| ProSiteProfiles | 743 | 773 | 31 | 8.374 | ||
| TIGRFAM | 745 | 772 | 28 | 9.90E-04 | ||
| Pfam | 746 | 772 | 27 | 0.037 | ||
| ProSiteProfiles | 777 | 811 | 35 | 6.851 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj4g3v2576110.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2576110.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.