Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj4g3v2717190.2

Overview

Field Value
Gene ID Lj4g3v2717190
Transcript ID Lj4g3v2717190.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Glycine max] gi|356511063|ref|XP_003524251.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 64 64 – –
PANTHER
PTHR10857:SF34
61 368 308 4.80E-226 –
PANTHER
PTHR10857
61 368 308 4.80E-226 –
SMART
SM00327
100 303 204 1.80E-07
IPR002035
SUPERFAMILY
SSF53300
101 284 184 3.63E-12
IPR002035
Pfam
PF07002
125 338 214 1.70E-72
IPR010734
MobiDBLite
mobidb-lite
342 372 31 – –
Gene3D
G3DSA:3.30.40.10
390 441 52 1.10E-06
IPR013083
SUPERFAMILY
SSF57850
396 441 46 1.80E-06 –
Pfam
PF13920
399 439 41 5.80E-08 –
ProSiteProfiles
PS50089
402 435 34 10.763
IPR001841
CDD
cd00162
402 438 37 1.39E-05 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 17

Expression data

Expression pattern

Expression pattern of Lj4g3v2717190.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2717190.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.