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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2775550 |
| Transcript ID | Lj4g3v2775550.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: cellulose synthase A catalytic subunit 6 [UDP]-forming] gi|356525568|ref|XP_003531396.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 285 | 285 | – | – | |
| SUPERFAMILY | 24 | 111 | 88 | 2.74E-36 | – | |
| Gene3D | 24 | 113 | 90 | 2.40E-34 | ||
| Pfam | 29 | 105 | 77 | 4.30E-41 | ||
| ProSiteProfiles | 39 | 85 | 47 | 8.919 | ||
| PANTHER | 76 | 672 | 597 | 0 | – | |
| PANTHER | 76 | 672 | 597 | 0 | – | |
| MobiDBLite | 136 | 160 | 25 | – | – | |
| MobiDBLite | 241 | 273 | 33 | – | – | |
| Phobius | 286 | 306 | 21 | – | – | |
| TMHMM | 289 | 306 | 18 | – | – | |
| Phobius | 307 | 312 | 6 | – | – | |
| Phobius | 313 | 332 | 20 | – | – | |
| TMHMM | 313 | 332 | 20 | – | – | |
| Phobius | 333 | 875 | 543 | – | – | |
| Pfam | 366 | 1085 | 720 | 0 | ||
| SUPERFAMILY | 380 | 430 | 51 | 2.93E-08 | ||
| SUPERFAMILY | 534 | 655 | 122 | 2.93E-08 | ||
| PANTHER | 721 | 1082 | 362 | 0 | – | |
| PANTHER | 721 | 1082 | 362 | 0 | – | |
| SUPERFAMILY | 776 | 915 | 140 | 2.93E-08 | ||
| TMHMM | 874 | 896 | 23 | – | – | |
| Phobius | 876 | 896 | 21 | – | – | |
| Phobius | 897 | 907 | 11 | – | – | |
| Phobius | 908 | 926 | 19 | – | – | |
| TMHMM | 908 | 930 | 23 | – | – | |
| Phobius | 927 | 945 | 19 | – | – | |
| TMHMM | 945 | 967 | 23 | – | – | |
| Phobius | 946 | 968 | 23 | – | – | |
| Phobius | 969 | 988 | 20 | – | – | |
| Phobius | 989 | 1014 | 26 | – | – | |
| TMHMM | 992 | 1014 | 23 | – | – | |
| Phobius | 1015 | 1025 | 11 | – | – | |
| TMHMM | 1024 | 1046 | 23 | – | – | |
| Phobius | 1026 | 1046 | 21 | – | – | |
| Phobius | 1047 | 1057 | 11 | – | – | |
| Phobius | 1058 | 1078 | 21 | – | – | |
| TMHMM | 1059 | 1078 | 20 | – | – | |
| Phobius | 1079 | 1099 | 21 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Cellulose synthase (UDP-forming) activity | Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1). | ||
| Biological process | Cellulose biosynthetic process | The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. |
Expression pattern of Lj4g3v2775550.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2775550.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.