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Lj4g3v2788050.1

Overview

Field Value
Gene ID Lj4g3v2788050
Transcript ID Lj4g3v2788050.1
Lotus japonicus genome version MG20 v3.0
Description ABC transporter family protein [Populus trichocarpa] gi|224093878|ref|XP_002310031.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF52540
1 194 194 1.61E-30
IPR027417
PANTHER
PTHR19211:SF48
1 529 529 0 –
Gene3D
G3DSA:3.40.50.300
1 46 46 8.20E-34
IPR027417
PANTHER
PTHR19211
1 529 529 0 –
Pfam
PF00005
2 149 148 1.70E-11
IPR003439
Gene3D
G3DSA:3.40.50.300
84 234 151 8.20E-34
IPR027417
ProSitePatterns
PS00211
121 135 15 –
IPR017871
Pfam
PF12848
188 275 88 1.60E-20
IPR032781
Coils
Coil
239 259 21 – –
SUPERFAMILY
SSF52540
266 486 221 8.98E-47
IPR027417
ProSiteProfiles
PS50893
286 501 216 18.387
IPR003439
CDD
cd03221
286 477 192 1.96E-57 –
Gene3D
G3DSA:3.40.50.300
287 530 244 1.20E-49
IPR027417
Pfam
PF00005
303 433 131 1.00E-25
IPR003439
SMART
SM00382
310 478 169 1.90E-11
IPR003593
ProSitePatterns
PS00211
405 419 15 –
IPR017871
Coils
Coil
491 511 21 – –
MobiDBLite
mobidb-lite
503 553 51 – –
Coils
Coil
513 542 30 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0016887
Molecular function ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
Subterm of

Genome browser

LORE1 insertions 11

Expression data

Expression pattern

Expression pattern of Lj4g3v2788050.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2788050.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.