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Lj4g3v2951260.1

Overview

Field Value
Gene ID Lj4g3v2951260
Transcript ID Lj4g3v2951260.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: tubulin beta-1 chain-like [Cicer arietinum] gi|502139309|ref|XP_004503723.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SMART
SM00864
1 136 136 1.10E-11
IPR003008
Gene3D
G3DSA:3.40.50.1440
19 155 137 1.10E-74
IPR003008
PANTHER
PTHR11588:SF124
19 334 316 6.20E-285 –
PANTHER
PTHR11588
19 334 316 6.20E-285
IPR000217
Pfam
PF00091
19 103 85 5.60E-28
IPR003008
SUPERFAMILY
SSF52490
22 135 114 1.18E-45
IPR003008
PRINTS
PR01161
24 42 19 3.30E-58
IPR000217
ProSitePatterns
PS00227
32 38 7 –
IPR017975
PRINTS
PR01161
43 64 22 3.30E-58
IPR000217
CDD
cd02187
43 318 276 0 –
PRINTS
PR01163
44 56 13 2.70E-89
IPR002453
PRINTS
PR01161
68 81 14 3.30E-58
IPR000217
PRINTS
PR01161
82 102 21 3.30E-58
IPR000217
PRINTS
PR01163
104 116 13 2.70E-89
IPR002453
PRINTS
PR01163
122 131 10 2.70E-89
IPR002453
SUPERFAMILY
SSF55307
136 321 186 1.04E-79
IPR008280
PRINTS
PR01163
137 150 14 2.70E-89
IPR002453
SMART
SM00865
138 275 138 1.40E-37
IPR018316
Pfam
PF03953
153 273 121 4.50E-40
IPR018316
Gene3D
G3DSA:3.30.1330.20
156 265 110 2.80E-50
IPR018316
PRINTS
PR01163
157 173 17 2.70E-89
IPR002453
PRINTS
PR01163
203 221 19 2.70E-89
IPR002453
PRINTS
PR01163
221 235 15 2.70E-89
IPR002453
PRINTS
PR01163
239 262 24 2.70E-89
IPR002453
PRINTS
PR01161
262 290 29 3.30E-58
IPR000217
Gene3D
G3DSA:1.10.287.600
266 322 57 4.10E-33
IPR023123
PRINTS
PR01163
269 280 12 2.70E-89
IPR002453
Coils
Coil
300 334 35 – –
PRINTS
PR01163
304 322 19 2.70E-89
IPR002453

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005200
Molecular function Structural constituent of cytoskeleton The action of a molecule that contributes to the structural integrity of a cytoskeletal structure.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of
GO:0005874
Cellular component Microtubule Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle.
Subterm of
Part of
GO:0007017
Biological process Microtubule-based process Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins.
Subterm of

Genome browser

LORE1 insertions 23

Expression data

Expression pattern

Expression pattern of Lj4g3v2951260.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v2951260.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.