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Lj4g3v3014470.1

Overview

Field Value
Gene ID Lj4g3v3014470
Transcript ID Lj4g3v3014470.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: importin subunit beta-1-like [Glycine max] gi|356523655|ref|XP_003530452.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10527
3 868 866 0 –
SUPERFAMILY
SSF48371
3 859 857 1.49E-160
IPR016024
PANTHER
PTHR10527:SF19
3 868 866 0
IPR027140
SMART
SM00913
23 103 81 2.10E-07
IPR001494
ProSiteProfiles
PS50166
23 103 81 17.627
IPR001494
Pfam
PF03810
23 102 80 1.50E-12
IPR001494
Gene3D
G3DSA:1.25.10.10
129 859 731 9.20E-157
IPR011989
CDD
cd00020
321 439 119 0.0010337 –
Pfam
PF13513
381 437 57 3.00E-08 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006886
Biological process Intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
Subterm of
Part of
GO:0006913
Biological process Nucleocytoplasmic transport The directed movement of molecules between the nucleus and the cytoplasm.
Subterm of
GO:0008536
Molecular function Ran GTPase binding Interacting selectively and non-covalently with Ran, a conserved Ras-like GTP-binding protein, implicated in nucleocytoplasmic transport, cell cycle progression, spindle assembly, nuclear organization and nuclear envelope (NE) assembly.
Subterm of

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj4g3v3014470.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v3014470.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.