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Lj4g3v3093870.1

Overview

Field Value
Gene ID Lj4g3v3093870
Transcript ID Lj4g3v3093870.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: leucine-rich repeat extensin-like protein 3-like [Cicer arietinum] gi|502163490|ref|XP_004512856.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP 1 26 26
Phobius 1 4 4
SignalP 1 23 23
SignalP 1 26 26
Phobius 1 28 28
Phobius 5 23 19
TMHMM 7 29 23
Phobius 24 28 5
Phobius 29 692 664
PANTHER 29 370 342 7.80E-267
Gene3D 42 324 283 5.40E-73
SUPERFAMILY 43 324 282 2.04E-49
Pfam 46 78 33 4.90E-04
Pfam 116 171 56 4.20E-07
MobiDBLite 370 679 310
PRINTS 377 389 13 9.00E-12
PRINTS 389 410 22 9.00E-12
PRINTS 417 433 17 9.00E-12
PANTHER 420 690 271 7.80E-267
PRINTS 445 462 18 9.00E-12

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj4g3v3093870.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v3093870.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.