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Lj4g3v3114070.1

Overview

Field Value
Gene ID Lj4g3v3114070
Transcript ID Lj4g3v3114070.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Glycine max] gi|356527870|ref|XP_003532529.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR18934:SF112
1 244 244 0 –
PANTHER
PTHR18934
1 244 244 0 –
SMART
SM00487
40 233 194 9.60E-29
IPR014001
SUPERFAMILY
SSF52540
41 233 193 3.56E-80
IPR027417
Gene3D
G3DSA:3.40.50.300
42 203 162 2.60E-45
IPR027417
Pfam
PF00270
51 203 153 1.70E-08
IPR011545
ProSiteProfiles
PS51192
52 219 168 20.839
IPR014001
CDD
cd00046
65 201 137 1.81E-23 –
PANTHER
PTHR18934
298 861 564 0 –
PANTHER
PTHR18934:SF112
298 861 564 0 –
SUPERFAMILY
SSF52540
300 620 321 3.56E-80
IPR027417
ProSiteProfiles
PS51194
308 482 175 15.538
IPR001650
Pfam
PF00271
310 441 132 3.70E-14
IPR001650
Gene3D
G3DSA:3.40.50.300
310 452 143 3.40E-13
IPR027417
CDD
cd00079
312 449 138 2.27E-09 –
SMART
SM00490
336 442 107 2.20E-13
IPR001650
SMART
SM00847
504 594 91 4.80E-34
IPR007502
Pfam
PF04408
505 593 89 4.10E-22
IPR007502
Pfam
PF07717
631 742 112 4.60E-16
IPR011709
SUPERFAMILY
SSF54768
828 906 79 2.65E-12 –
Gene3D
G3DSA:3.30.160.20
840 905 66 3.60E-12
IPR014720
CDD
cd00048
841 904 64 2.90E-08 –
SMART
SM00358
842 905 64 8.50E-05
IPR014720
Pfam
PF00035
842 903 62 2.20E-09
IPR014720
MobiDBLite
mobidb-lite
908 939 32 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0004386
Molecular function Helicase activity Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions 21

Expression data

Expression pattern

Expression pattern of Lj4g3v3114070.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v3114070.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.