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| Field | Value |
|---|---|
| Gene ID | Lj4g3v3114630 |
| Transcript ID | Lj4g3v3114630.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Cicer arietinum] gi|502138119|ref|XP_004503293.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 207 | 207 | 0 | – | |
| ProSiteProfiles | 1 | 19 | 19 | 5 | – | |
| MobiDBLite | 1 | 52 | 52 | – | – | |
| SignalP | 1 | 30 | 30 | – | – | |
| PANTHER | 1 | 207 | 207 | 0 | – | |
| ProSiteProfiles | 53 | 83 | 31 | 8.265 | ||
| Pfam | 57 | 83 | 27 | 0.064 | ||
| Gene3D | 64 | 202 | 139 | 4.60E-05 | ||
| ProSiteProfiles | 84 | 118 | 35 | 11.137 | ||
| Pfam | 86 | 115 | 30 | 3.90E-06 | ||
| TIGRFAM | 86 | 116 | 31 | 7.70E-07 | ||
| Pfam | 117 | 146 | 30 | 4.50E-06 | ||
| TIGRFAM | 117 | 147 | 31 | 1.70E-06 | ||
| ProSiteProfiles | 119 | 145 | 27 | 7.081 | ||
| ProSiteProfiles | 146 | 180 | 35 | 11.477 | ||
| Pfam | 148 | 176 | 29 | 6.90E-08 | ||
| TIGRFAM | 148 | 174 | 27 | 4.00E-06 | ||
| SUPERFAMILY | 172 | 359 | 188 | 3.40E-06 | – | |
| Pfam | 179 | 202 | 24 | 4.50E-04 | ||
| TIGRFAM | 179 | 202 | 24 | 1.70E-04 | ||
| ProSiteProfiles | 181 | 207 | 27 | 5.371 | ||
| ProSiteProfiles | 208 | 238 | 31 | 8.199 | ||
| TIGRFAM | 210 | 241 | 32 | 3.30E-06 | ||
| Gene3D | 230 | 390 | 161 | 1.10E-09 | ||
| PANTHER | 236 | 642 | 407 | 0 | – | |
| PANTHER | 236 | 642 | 407 | 0 | – | |
| Pfam | 238 | 265 | 28 | 4.50E-07 | ||
| ProSiteProfiles | 239 | 269 | 31 | 9.624 | ||
| TIGRFAM | 241 | 265 | 25 | 6.30E-05 | ||
| ProSiteProfiles | 270 | 304 | 35 | 11.575 | ||
| Pfam | 272 | 301 | 30 | 7.00E-08 | ||
| TIGRFAM | 272 | 300 | 29 | 3.20E-07 | ||
| TIGRFAM | 303 | 333 | 31 | 1.50E-05 | ||
| ProSiteProfiles | 305 | 331 | 27 | 6.928 | ||
| Pfam | 331 | 359 | 29 | 1.40E-06 | ||
| ProSiteProfiles | 332 | 366 | 35 | 11.772 | ||
| TIGRFAM | 335 | 365 | 31 | 1.10E-07 | ||
| Pfam | 363 | 410 | 48 | 1.10E-08 | ||
| TIGRFAM | 365 | 398 | 34 | 4.70E-05 | ||
| ProSiteProfiles | 367 | 397 | 31 | 7.377 | ||
| ProSiteProfiles | 398 | 432 | 35 | 6.182 | ||
| ProSiteProfiles | 433 | 463 | 31 | 6.226 | ||
| Pfam | 463 | 510 | 48 | 1.40E-11 | ||
| ProSiteProfiles | 464 | 498 | 35 | 12.649 | ||
| TIGRFAM | 466 | 500 | 35 | 1.10E-06 | ||
| ProSiteProfiles | 499 | 529 | 31 | 6.456 | ||
| ProSiteProfiles | 535 | 565 | 31 | 8.429 | ||
| Pfam | 538 | 562 | 25 | 4.10E-04 | ||
| Gene3D | 595 | 621 | 27 | 1.10E-09 | ||
| ProSiteProfiles | 601 | 635 | 35 | 7.728 | ||
| Pfam | 638 | 760 | 123 | 4.70E-41 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj4g3v3114630.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v3114630.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.