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Lj4g3v3115170.2

Overview

Field Value
Gene ID Lj4g3v3115170
Transcript ID Lj4g3v3115170.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: TPR repeat-containing thioredoxin TDX-like [Glycine max] gi|356524704|ref|XP_003530968.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 1 259 259 2.20E-102
PANTHER 1 259 259 2.20E-102
CDD 4 43 40 8.30E-16
SUPERFAMILY 96 203 108 2.81E-22
Gene3D 100 205 106 2.60E-24
SMART 102 135 34 2.2
ProSiteProfiles 102 135 34 7.936
ProSiteProfiles 102 203 102 18.356
SMART 136 169 34 0.0086
ProSiteProfiles 136 169 34 8.467
Pfam 142 193 52 4.00E-04
SMART 170 203 34 100
ProSiteProfiles 170 203 34 5.251
MobiDBLite 216 251 36
Coils 219 239 21
SUPERFAMILY 229 367 139 2.73E-32
ProSiteProfiles 242 368 127 12.879
Gene3D 253 368 116 2.90E-31
Pfam 280 364 85 2.60E-24
CDD 280 363 84 4.71E-34
ProSitePatterns 286 304 19

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Biological process Cell redox homeostasis Any process that maintains the redox environment of a cell or compartment within a cell.

Expression data

Expression pattern

Expression pattern of Lj4g3v3115170.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v3115170.2, powered by CORGI.

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