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| Field | Value |
|---|---|
| Gene ID | Lj5g3v0104740 |
| Transcript ID | Lj5g3v0104740.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like [Glycine max] gi|356577033|ref|XP_003556634.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 18 | 18 | 6.621 | ||
| PANTHER | 1 | 270 | 270 | 1.90E-119 | – | |
| Phobius | 1 | 347 | 347 | – | – | |
| PANTHER | 1 | 270 | 270 | 1.90E-119 | – | |
| ProSiteProfiles | 19 | 53 | 35 | 12.441 | ||
| TIGRFAM | 22 | 54 | 33 | 2.90E-10 | ||
| Pfam | 22 | 63 | 42 | 7.90E-12 | ||
| Gene3D | 23 | 71 | 49 | 1.00E-09 | ||
| ProSiteProfiles | 54 | 89 | 36 | 8.659 | ||
| ProSiteProfiles | 90 | 126 | 37 | 7.377 | ||
| ProSiteProfiles | 127 | 161 | 35 | 10.939 | ||
| TIGRFAM | 129 | 164 | 36 | 1.70E-06 | ||
| Pfam | 129 | 175 | 47 | 4.60E-11 | ||
| Gene3D | 130 | 312 | 183 | 1.00E-09 | ||
| SUPERFAMILY | 138 | 236 | 99 | 2.94E-05 | ||
| ProSiteProfiles | 163 | 197 | 35 | 11.816 | ||
| TIGRFAM | 170 | 198 | 29 | 3.20E-07 | ||
| Pfam | 205 | 254 | 50 | 5.20E-15 | ||
| ProSiteProfiles | 206 | 240 | 35 | 13.855 | ||
| TIGRFAM | 208 | 242 | 35 | 4.50E-11 | ||
| ProSiteProfiles | 241 | 275 | 35 | 8.298 | ||
| TIGRFAM | 243 | 274 | 32 | 0.0019 | ||
| PANTHER | 286 | 520 | 235 | 1.90E-119 | – | |
| PANTHER | 286 | 520 | 235 | 1.90E-119 | – | |
| SUPERFAMILY | 288 | 311 | 24 | 2.94E-05 | ||
| ProSiteProfiles | 291 | 325 | 35 | 8.506 | ||
| Pfam | 294 | 314 | 21 | 0.43 | ||
| Phobius | 348 | 367 | 20 | – | – | |
| Phobius | 368 | 435 | 68 | – | – | |
| ProSiteProfiles | 409 | 443 | 35 | 8.868 | ||
| Pfam | 412 | 441 | 30 | 0.39 | ||
| Phobius | 436 | 455 | 20 | – | – | |
| Phobius | 456 | 525 | 70 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj5g3v0104740.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v0104740.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.