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Lj5g3v0614410.1

Overview

Field Value
Gene ID Lj5g3v0614410
Transcript ID Lj5g3v0614410.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description Chromodomain-helicase-DNA-binding protein [Medicago truncatula] gi|358346906|ref|XP_003637505.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24098
16 571 556 0 –
PANTHER
PTHR24098:SF12
16 571 556 0 –
MobiDBLite
mobidb-lite
38 70 33 – –
MobiDBLite
mobidb-lite
107 150 44 – –
Pfam
PF16135
229 294 66 4.30E-06
IPR032308
Pfam
PF16135
422 495 74 2.90E-21
IPR032308
SUPERFAMILY
SSF57903
519 566 48 1.33E-14
IPR011011
Gene3D
G3DSA:3.30.40.10
519 569 51 9.50E-17
IPR013083
ProSiteProfiles
PS50016
521 566 46 10.14
IPR019787
SMART
SM00249
523 564 42 2.70E-11
IPR001965
CDD
cd15539
523 563 41 4.54E-16 –
ProSitePatterns
PS01359
524 563 40 –
IPR019786
SUPERFAMILY
SSF57903
591 647 57 6.17E-07
IPR011011
Gene3D
G3DSA:3.30.40.10
593 649 57 1.80E-07
IPR013083
SMART
SM00249
593 650 58 3.40E-04
IPR001965
PANTHER
PTHR24098
593 749 157 0 –
PANTHER
PTHR24098:SF12
593 749 157 0 –
ProSitePatterns
PS01359
594 649 56 –
IPR019786

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 23

Expression data

Expression pattern

Expression pattern of Lj5g3v0614410.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v0614410.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.