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| Field | Value |
|---|---|
| Gene ID | Lj5g3v0840940 |
| Transcript ID | Lj5g3v0840940.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable ATP-dependent RNA helicase DHX36-like [Glycine max] gi|356534552|ref|XP_003535817.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 355 | 355 | 0 | – | |
| PANTHER | 1 | 355 | 355 | 0 | – | |
| MobiDBLite | 81 | 127 | 47 | – | – | |
| SMART | 151 | 344 | 194 | 2.30E-27 | ||
| Gene3D | 152 | 313 | 162 | 9.30E-44 | ||
| SUPERFAMILY | 153 | 344 | 192 | 4.15E-80 | ||
| Pfam | 159 | 315 | 157 | 7.20E-07 | ||
| ProSiteProfiles | 163 | 330 | 168 | 18.808 | ||
| CDD | 170 | 312 | 143 | 4.62E-22 | – | |
| ProSitePatterns | 272 | 281 | 10 | – | ||
| PANTHER | 403 | 921 | 519 | 0 | – | |
| PANTHER | 403 | 921 | 519 | 0 | – | |
| SUPERFAMILY | 407 | 723 | 317 | 4.15E-80 | ||
| ProSiteProfiles | 413 | 587 | 175 | 15.902 | ||
| Pfam | 418 | 546 | 129 | 1.40E-15 | ||
| Gene3D | 421 | 573 | 153 | 4.50E-10 | ||
| CDD | 428 | 554 | 127 | 3.29E-08 | – | |
| SMART | 438 | 547 | 110 | 1.30E-17 | ||
| SMART | 609 | 700 | 92 | 3.30E-32 | ||
| Pfam | 610 | 693 | 84 | 5.10E-21 | ||
| Pfam | 738 | 849 | 112 | 7.60E-20 | ||
| Coils | 871 | 891 | 21 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Helicase activity | Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of Lj5g3v0840940.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v0840940.1, powered by CORGI.
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