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| Field | Value |
|---|---|
| Gene ID | Lj5g3v0840940 |
| Transcript ID | Lj5g3v0840940.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable ATP-dependent RNA helicase DHX36-like isoform X1 [Cicer arietinum] gi|502122238|ref|XP_004497647.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 41 | 76 | 36 | – | – | |
| PANTHER | 49 | 117 | 69 | 0 | – | |
| PANTHER | 49 | 117 | 69 | 0 | – | |
| PANTHER | 133 | 464 | 332 | 0 | – | |
| PANTHER | 133 | 464 | 332 | 0 | – | |
| MobiDBLite | 190 | 236 | 47 | – | – | |
| SMART | 260 | 453 | 194 | 2.30E-27 | ||
| Gene3D | 261 | 422 | 162 | 1.10E-43 | ||
| SUPERFAMILY | 262 | 453 | 192 | 5.88E-80 | ||
| Pfam | 268 | 424 | 157 | 8.50E-07 | ||
| ProSiteProfiles | 272 | 439 | 168 | 18.808 | ||
| CDD | 279 | 421 | 143 | 2.85E-22 | – | |
| ProSitePatterns | 381 | 390 | 10 | – | ||
| PANTHER | 512 | 1030 | 519 | 0 | – | |
| PANTHER | 512 | 1030 | 519 | 0 | – | |
| SUPERFAMILY | 516 | 832 | 317 | 5.88E-80 | ||
| ProSiteProfiles | 522 | 696 | 175 | 15.902 | ||
| Pfam | 527 | 655 | 129 | 1.70E-15 | ||
| Gene3D | 530 | 682 | 153 | 5.30E-10 | ||
| CDD | 537 | 663 | 127 | 2.65E-08 | – | |
| SMART | 547 | 656 | 110 | 1.30E-17 | ||
| SMART | 718 | 809 | 92 | 3.30E-32 | ||
| Pfam | 719 | 802 | 84 | 6.00E-21 | ||
| Pfam | 847 | 958 | 112 | 8.90E-20 | ||
| Coils | 980 | 1000 | 21 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Helicase activity | Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of Lj5g3v0840940.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v0840940.2, powered by CORGI.
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