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Lj5g3v0841020.1

Overview

Field Value
Gene ID Lj5g3v0841020
Transcript ID Lj5g3v0841020.1
Lotus japonicus genome version MG20 v3.0
Description Syntaxin-121 [Medicago truncatula] gi|357440101|ref|XP_003590328.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 278 278 – –
PANTHER
PTHR19957
1 301 301 3.40E-208 –
PANTHER
PTHR19957:SF69
1 301 301 3.40E-208 –
SMART
SM00503
32 158 127 2.10E-39
IPR006011
SUPERFAMILY
SSF47661
35 262 228 3.92E-47
IPR010989
Gene3D
G3DSA:1.20.58.70
36 262 227 9.40E-48 –
Pfam
PF00804
37 242 206 1.50E-70
IPR006011
CDD
cd00179
37 194 158 4.22E-39 –
Coils
Coil
37 71 35 – –
MobiDBLite
mobidb-lite
109 131 23 – –
SMART
SM00397
202 269 68 2.00E-18
IPR000727
CDD
cd15848
206 266 61 1.84E-23 –
ProSiteProfiles
PS50192
207 269 63 18.466
IPR000727
ProSitePatterns
PS00914
213 252 40 –
IPR006012
Pfam
PF05739
243 295 53 1.20E-19
IPR000727
TMHMM
TMhelix
278 300 23 – –
Phobius
TRANSMEMBRANE
279 300 22 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
301 302 2 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005484
Molecular function SNAP receptor activity Acting as a marker to identify a membrane and interacting selectively with one or more SNAREs on another membrane to mediate membrane fusion.
Subterm of
GO:0006886
Biological process Intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
Subterm of
Part of
GO:0016020
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Subterm of
GO:0016192
Biological process Vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
Subterm of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj5g3v0841020.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v0841020.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.