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Lj5g3v0942160.1

Overview

Field Value
Gene ID Lj5g3v0942160
Transcript ID Lj5g3v0942160.1
Lotus japonicus genome version MG20 v3.0
Description TPR domain protein [Medicago truncatula] gi|357440919|ref|XP_003590737.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR26312
1 300 300 1.40E-135 –
PANTHER
PTHR26312:SF78
1 300 300 1.40E-135 –
ProSiteProfiles
PS50293
32 122 91 12.259
IPR013026
Gene3D
G3DSA:1.25.40.10
33 138 106 2.40E-26
IPR011990
SMART
SM00386
34 66 33 320
IPR003107
SUPERFAMILY
SSF48452
37 128 92 2.09E-13
IPR011990
SMART
SM00386
68 100 33 750
IPR003107
SMART
SM00386
103 135 33 51
IPR003107
MobiDBLite
mobidb-lite
139 165 27 – –
SUPERFAMILY
SSF48452
185 287 103 2.09E-13
IPR011990
SMART
SM00386
193 225 33 86
IPR003107
Gene3D
G3DSA:1.25.40.10
195 288 94 2.40E-26
IPR011990
ProSiteProfiles
PS50293
196 282 87 12.663
IPR013026
Pfam
PF13181
224 247 24 0.052
IPR019734
SMART
SM00386
228 260 33 28
IPR003107
SMART
SM00386
263 295 33 270
IPR003107

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0006396
Biological process RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Subterm of
Part of

Genome browser

LORE1 insertions 27

Expression data

Expression pattern

Expression pattern of Lj5g3v0942160.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v0942160.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.