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Lj5g3v1003910.1

Overview

Field Value
Gene ID Lj5g3v1003910
Transcript ID Lj5g3v1003910.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ETO1-like protein 1-like [Glycine max] gi|356500164|ref|XP_003518903.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 22 22 – –
PANTHER
PTHR23083:SF430
18 355 338 0 –
PANTHER
PTHR23083
18 355 338 0 –
SMART
SM00225
178 278 101 1.40E-04
IPR000210
SUPERFAMILY
SSF54695
180 274 95 5.73E-08
IPR011333
Gene3D
G3DSA:3.30.710.10
180 275 96 6.50E-09 –
Gene3D
G3DSA:1.25.40.10
373 405 33 1.90E-14
IPR011990
PANTHER
PTHR23083:SF430
375 886 512 0 –
PANTHER
PTHR23083
375 886 512 0 –
SMART
SM00028
379 412 34 180
IPR019734
ProSiteProfiles
PS50005
379 412 34 5.045
IPR019734
SUPERFAMILY
SSF48452
460 780 321 1.29E-15
IPR011990
Gene3D
G3DSA:1.25.40.10
468 670 203 1.90E-14
IPR011990
SMART
SM00028
508 541 34 95
IPR019734
SMART
SM00028
635 668 34 330
IPR019734
SUPERFAMILY
SSF48452
693 876 184 1.33E-17
IPR011990
Gene3D
G3DSA:1.25.40.10
695 875 181 2.10E-22
IPR011990
ProSiteProfiles
PS50005
709 742 34 9.352
IPR019734
ProSiteProfiles
PS50293
709 742 34 9.901
IPR013026
SMART
SM00028
709 742 34 0.0021
IPR019734
Coils
Coil
754 781 28 – –
SMART
SM00028
838 871 34 6.1
IPR019734
ProSiteProfiles
PS50005
838 871 34 5.694
IPR019734

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 15

Expression data

Expression pattern

Expression pattern of Lj5g3v1003910.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1003910.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.