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| Field | Value |
|---|---|
| Gene ID | Lj5g3v1552110 |
| Transcript ID | Lj5g3v1552110.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357442157|ref|XP_003591356.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 49 | 454 | 406 | 2.50E-198 | – | |
| PANTHER | 49 | 454 | 406 | 2.50E-198 | – | |
| SUPERFAMILY | 160 | 274 | 115 | 8.01E-06 | ||
| Pfam | 170 | 214 | 45 | 0.005 | ||
| ProSiteProfiles | 171 | 201 | 31 | 7.64 | ||
| Gene3D | 221 | 302 | 82 | 1.40E-06 | ||
| Pfam | 236 | 283 | 48 | 5.80E-17 | ||
| ProSiteProfiles | 237 | 271 | 35 | 13.877 | ||
| TIGRFAM | 239 | 273 | 35 | 2.10E-11 | ||
| ProSiteProfiles | 272 | 306 | 35 | 12.288 | ||
| TIGRFAM | 274 | 308 | 35 | 4.70E-10 | ||
| SUPERFAMILY | 288 | 471 | 184 | 3.92E-05 | – | |
| Pfam | 306 | 351 | 46 | 4.50E-11 | ||
| ProSiteProfiles | 307 | 341 | 35 | 11.378 | ||
| TIGRFAM | 310 | 343 | 34 | 2.00E-06 | ||
| Gene3D | 340 | 472 | 133 | 1.40E-06 | ||
| ProSiteProfiles | 342 | 376 | 35 | 8.846 | ||
| ProSiteProfiles | 377 | 411 | 35 | 8.451 | ||
| Pfam | 384 | 409 | 26 | 0.019 | ||
| ProSiteProfiles | 412 | 446 | 35 | 8.616 | ||
| SUPERFAMILY | 416 | 472 | 57 | 8.01E-06 | ||
| TIGRFAM | 419 | 447 | 29 | 0.0014 | ||
| Pfam | 419 | 443 | 25 | 0.0051 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj5g3v1552110.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v1552110.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.