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Lj5g3v1575200.2

Overview

Field Value
Gene ID Lj5g3v1575200
Transcript ID Lj5g3v1575200.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description ATP-dependent RNA helicase-like protein [Medicago truncatula] gi|357442187|ref|XP_003591371.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR18934
31 703 673 0 –
SUPERFAMILY
SSF52540
51 607 557 2.96E-132
IPR027417
SMART
SM00487
52 242 191 4.90E-33
IPR014001
Gene3D
G3DSA:3.40.50.300
54 217 164 9.30E-53
IPR027417
ProSiteProfiles
PS51192
64 233 170 22.015
IPR014001
SMART
SM00382
69 242 174 0.0038
IPR003593
Pfam
PF13401
70 214 145 1.40E-07
IPR003593
CDD
cd00046
73 215 143 2.06E-31 –
Gene3D
G3DSA:3.40.50.300
236 409 174 7.70E-12
IPR027417
CDD
cd00079
240 404 165 2.49E-14 –
ProSiteProfiles
PS51194
258 438 181 16.395
IPR001650
Pfam
PF00271
260 396 137 5.20E-11
IPR001650
SMART
SM00490
279 397 119 1.50E-17
IPR001650
SMART
SM00847
458 548 91 2.20E-34
IPR007502
Pfam
PF04408
459 547 89 5.30E-24
IPR007502
Pfam
PF07717
583 685 103 8.60E-23
IPR011709

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004386
Molecular function Helicase activity Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
Subterm of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj5g3v1575200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1575200.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.