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| Field | Value |
|---|---|
| Gene ID | Lj5g3v1853080 |
| Transcript ID | Lj5g3v1853080.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like isoform X1 [Cicer arietinum] gi|502118578|ref|XP_004496333.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 19 | 34 | 16 | 2.00E-260 | – | |
| PANTHER | 19 | 34 | 16 | 2.00E-260 | – | |
| PANTHER | 67 | 74 | 8 | 2.00E-260 | – | |
| PANTHER | 67 | 74 | 8 | 2.00E-260 | – | |
| PANTHER | 111 | 163 | 53 | 2.00E-260 | – | |
| PANTHER | 111 | 163 | 53 | 2.00E-260 | – | |
| ProSiteProfiles | 124 | 158 | 35 | 7.629 | ||
| Pfam | 132 | 171 | 40 | 8.50E-07 | ||
| ProSiteProfiles | 159 | 196 | 38 | 7.081 | ||
| Pfam | 193 | 224 | 32 | 2.20E-10 | ||
| ProSiteProfiles | 197 | 231 | 35 | 11.093 | ||
| TIGRFAM | 200 | 232 | 33 | 1.20E-06 | ||
| PANTHER | 202 | 736 | 535 | 2.00E-260 | – | |
| PANTHER | 202 | 736 | 535 | 2.00E-260 | – | |
| Gene3D | 212 | 249 | 38 | 7.60E-04 | ||
| Pfam | 231 | 280 | 50 | 3.30E-17 | ||
| ProSiteProfiles | 232 | 266 | 35 | 13.636 | ||
| TIGRFAM | 234 | 267 | 34 | 8.10E-11 | ||
| ProSiteProfiles | 267 | 301 | 35 | 12.2 | ||
| TIGRFAM | 270 | 303 | 34 | 3.00E-08 | ||
| SUPERFAMILY | 282 | 332 | 51 | 4.97E-07 | – | |
| Pfam | 301 | 348 | 48 | 1.60E-16 | ||
| ProSiteProfiles | 302 | 336 | 35 | 13.263 | ||
| TIGRFAM | 305 | 338 | 34 | 4.70E-10 | ||
| Gene3D | 305 | 332 | 28 | 7.60E-04 | ||
| ProSiteProfiles | 337 | 371 | 35 | 12.332 | ||
| TIGRFAM | 339 | 373 | 35 | 1.80E-06 | ||
| Gene3D | 370 | 501 | 132 | 7.60E-04 | ||
| SUPERFAMILY | 371 | 509 | 139 | 4.97E-07 | – | |
| Pfam | 371 | 420 | 50 | 6.40E-20 | ||
| ProSiteProfiles | 372 | 406 | 35 | 13.888 | ||
| TIGRFAM | 374 | 408 | 35 | 9.30E-11 | ||
| ProSiteProfiles | 407 | 441 | 35 | 13.11 | ||
| TIGRFAM | 409 | 442 | 34 | 2.40E-09 | ||
| ProSiteProfiles | 442 | 476 | 35 | 8.857 | ||
| Pfam | 444 | 473 | 30 | 0.73 | ||
| ProSiteProfiles | 477 | 511 | 35 | 12.825 | ||
| Pfam | 477 | 524 | 48 | 3.60E-16 | ||
| TIGRFAM | 479 | 513 | 35 | 8.20E-09 | ||
| SUPERFAMILY | 488 | 685 | 198 | 1.28E-06 | – | |
| ProSiteProfiles | 512 | 546 | 35 | 11.948 | ||
| TIGRFAM | 514 | 548 | 35 | 1.90E-07 | ||
| Gene3D | 523 | 681 | 159 | 1.60E-05 | – | |
| ProSiteProfiles | 547 | 581 | 35 | 11.652 | ||
| Pfam | 550 | 595 | 46 | 7.10E-15 | ||
| TIGRFAM | 552 | 583 | 32 | 5.70E-06 | ||
| ProSiteProfiles | 582 | 616 | 35 | 11.159 | ||
| TIGRFAM | 584 | 613 | 30 | 1.70E-07 | ||
| Pfam | 617 | 664 | 48 | 2.90E-15 | ||
| ProSiteProfiles | 617 | 651 | 35 | 13.263 | ||
| TIGRFAM | 619 | 652 | 34 | 3.80E-09 | ||
| ProSiteProfiles | 652 | 686 | 35 | 10.249 | ||
| TIGRFAM | 654 | 679 | 26 | 8.20E-04 | ||
| ProSiteProfiles | 695 | 729 | 35 | 7.443 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj5g3v1853080.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v1853080.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.