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Lj5g3v1953000.1

Overview

Field Value
Gene ID Lj5g3v1953000
Transcript ID Lj5g3v1953000.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: LOW QUALITY PROTEIN: eukaryotic translation initiation factor 5B-like [Cicer arietinum] gi|502119038|ref|XP_004496483.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 353 353 – –
MobiDBLite
mobidb-lite
367 782 416 – –
Coils
Coil
461 489 29 – –
Coils
Coil
521 587 67 – –
PANTHER
PTHR23115
770 833 64 0 –
PANTHER
PTHR23115:SF186
770 833 64 0 –
SUPERFAMILY
SSF52540
779 1077 299 1.93E-64
IPR027417
ProSiteProfiles
PS51722
785 1001 217 44.828
IPR000795
Gene3D
G3DSA:3.40.50.300
787 998 212 8.50E-40
IPR027417
CDD
cd01887
788 998 211 2.77E-82 –
Pfam
PF00009
789 997 209 1.90E-33 –
PRINTS
PR00315
789 802 14 6.60E-07
IPR000795
TIGRFAM
TIGR00231
790 914 125 7.00E-16
IPR005225
PANTHER
PTHR23115:SF186
850 937 88 0 –
PANTHER
PTHR23115
850 937 88 0 –
PRINTS
PR00315
853 863 11 6.60E-07
IPR000795
PRINTS
PR00315
869 880 12 6.60E-07
IPR000795
PRINTS
PR00315
905 914 10 6.60E-07
IPR000795
PANTHER
PTHR23115:SF186
960 1372 413 0 –
PANTHER
PTHR23115
960 1372 413 0 –
Gene3D
G3DSA:2.40.30.10
1005 1115 111 3.50E-47 –
CDD
cd03703
1010 1120 111 3.30E-52 –
Pfam
PF03144
1024 1103 80 2.20E-11
IPR004161
SUPERFAMILY
SSF52156
1111 1240 130 1.44E-33
IPR023115
Pfam
PF11987
1130 1227 98 3.50E-22
IPR023115
Gene3D
G3DSA:3.40.50.10050
1134 1214 81 6.90E-30
IPR023115
SUPERFAMILY
SSF50447
1245 1377 133 1.47E-31
IPR009000
Gene3D
G3DSA:2.40.30.10
1247 1344 98 9.90E-39 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

Genome browser

LORE1 insertions 11

Expression data

Expression pattern

Expression pattern of Lj5g3v1953000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1953000.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.