Domain Predictions — View

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cd01887

Source: CDD

Description

IF2_eIF5B

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 12

Transcript	Name	Description	Predicted domains	Domain count
Lj1g3v4808860.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: translation initiation factor IF-2-like isoform X1 [Cicer arietinum] gi\|502154667\|ref\|XP_004509778.1\|	Domains G3DSA:2.40.30.10 G3DSA:3.40.50.10050 G3DSA:3.40.50.300 IPR000178 IPR000795 IPR005225 IPR009000 IPR023115 IPR027417 MF_00100_B NON_CYTOPLASMIC_DOMAIN PF00009 PF11987 PS51722 PTHR23115 PTHR23115:SF184 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF50447 SSF52156 SSF52540 TIGR00231 TIGR00487 cd01887 cd03692 cd03702	28
Lj3g3v0988820.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: translation initiation factor IF-2, chloroplastic-like [Glycine max] gi\|356525823\|ref\|XP_003531521.1\|	Domains Coil G3DSA:2.40.30.10 G3DSA:3.40.50.10050 G3DSA:3.40.50.300 IPR000178 IPR000795 IPR005225 IPR009000 IPR023115 IPR027417 MF_00100_B PF00009 PF11987 PR00315 PS01176 PS51722 PTHR23115 PTHR23115:SF138 SSF50447 SSF52156 SSF52540 TIGR00231 TIGR00487 cd01887 cd03692 cd03702 mobidb-lite	27
Lj5g3v1953000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: LOW QUALITY PROTEIN: eukaryotic translation initiation factor 5B-like [Cicer arietinum] gi\|502119038\|ref\|XP_004496483.1\|	Domains Coil G3DSA:2.40.30.10 G3DSA:3.40.50.10050 G3DSA:3.40.50.300 IPR000795 IPR004161 IPR005225 IPR009000 IPR023115 IPR027417 PF00009 PF03144 PF11987 PR00315 PS51722 PTHR23115 PTHR23115:SF186 SSF50447 SSF52156 SSF52540 TIGR00231 cd01887 cd03703 mobidb-lite	24
LotjaGi1g1v0752600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Translation initiation factor IF-2; TAIR: AT4G11160.1 Translation initiation factor 2, small GTP-binding protein; Swiss-Prot: sp\|B8EIA7\|IF2_METSB Translation initiation factor IF-2; TrEMBL-Plants: tr\|V7D180\|V7D180_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0752600	Domains G3DSA:2.40.30.10 G3DSA:3.40.50.10050 G3DSA:3.40.50.300 IPR000178 IPR000795 IPR005225 IPR009000 IPR015760 IPR023115 IPR027417 IPR036925 MF_00100_B NON_CYTOPLASMIC_DOMAIN PF00009 PF11987 PS51722 PTHR43381 PTHR43381:SF13 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SSF50447 SSF52156 SSF52540 TIGR00231 TIGR00487 cd01887 cd03692 cd03702	30
LotjaGi1g1v0752600.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Translation initiation factor IF-2; TAIR: AT4G11160.1 Translation initiation factor 2, small GTP-binding protein; Swiss-Prot: sp\|Q5FQM3\|IF2_GLUOX Translation initiation factor IF-2; TrEMBL-Plants: tr\|I1NBL5\|I1NBL5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0752600	Domains G3DSA:2.40.30.10 G3DSA:3.40.50.10050 G3DSA:3.40.50.300 IPR000178 IPR000795 IPR005225 IPR009000 IPR015760 IPR023115 IPR027417 IPR036925 MF_00100_B PF00009 PF11987 PS51722 PTHR43381 PTHR43381:SF13 SSF50447 SSF52156 SSF52540 TIGR00231 TIGR00487 cd01887 cd03692 cd03702	25
LotjaGi1g1v0752600.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Translation initiation factor IF-2; TAIR: AT4G11160.1 Translation initiation factor 2, small GTP-binding protein; Swiss-Prot: sp\|Q5FQM3\|IF2_GLUOX Translation initiation factor IF-2; TrEMBL-Plants: tr\|I1NBL5\|I1NBL5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0752600	Domains G3DSA:2.40.30.10 G3DSA:3.40.50.10050 G3DSA:3.40.50.300 IPR000178 IPR000795 IPR005225 IPR009000 IPR015760 IPR023115 IPR027417 IPR036925 MF_00100_B PF00009 PF11987 PS51722 PTHR43381 PTHR43381:SF13 SSF50447 SSF52156 SSF52540 TIGR00231 TIGR00487 cd01887 cd03692 cd03702	25
LotjaGi1g1v0752600.4 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Translation initiation factor IF-2; TAIR: AT4G11160.1 Translation initiation factor 2, small GTP-binding protein; Swiss-Prot: sp\|Q5FQM3\|IF2_GLUOX Translation initiation factor IF-2; TrEMBL-Plants: tr\|I1NBL5\|I1NBL5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0752600	Domains G3DSA:2.40.30.10 G3DSA:3.40.50.10050 G3DSA:3.40.50.300 IPR000178 IPR000795 IPR005225 IPR009000 IPR015760 IPR023115 IPR027417 IPR036925 MF_00100_B PF00009 PF11987 PS51722 PTHR43381 PTHR43381:SF13 SSF50447 SSF52156 SSF52540 TIGR00231 TIGR00487 cd01887 cd03692 cd03702	25
LotjaGi1g1v0752600.5 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Translation initiation factor IF-2; TAIR: AT4G11160.1 Translation initiation factor 2, small GTP-binding protein; Swiss-Prot: sp\|Q5FQM3\|IF2_GLUOX Translation initiation factor IF-2; TrEMBL-Plants: tr\|I1NBL5\|I1NBL5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0752600	Domains G3DSA:2.40.30.10 G3DSA:3.40.50.10050 G3DSA:3.40.50.300 IPR000178 IPR000795 IPR005225 IPR009000 IPR015760 IPR023115 IPR027417 IPR036925 MF_00100_B PF00009 PF11987 PS51722 PTHR43381 PTHR43381:SF13 SSF50447 SSF52156 SSF52540 TIGR00231 TIGR00487 cd01887 cd03692 cd03702	25
LotjaGi3g1v0142900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Translation initiation factor IF-2; TAIR: AT1G17220.1 Translation initiation factor 2, small GTP-binding protein; Swiss-Prot: sp\|P57997\|IF2C_PHAVU Translation initiation factor IF-2, chloroplastic; TrEMBL-Plants: tr\|V7BXF4\|V7BXF4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0142900	Domains Coil G3DSA:2.40.30.10 G3DSA:3.40.50.10050 G3DSA:3.40.50.300 IPR000178 IPR000795 IPR005225 IPR009000 IPR015760 IPR023115 IPR027417 IPR036925 MF_00100_B PF00009 PF11987 PR00315 PS01176 PS51722 PTHR43381 PTHR43381:SF5 SSF50447 SSF52156 SSF52540 TIGR00231 TIGR00487 cd01887 cd03692 cd03702 mobidb-lite	29
LotjaGi3g1v0142900.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Translation initiation factor IF-2; TAIR: AT1G17220.1 Translation initiation factor 2, small GTP-binding protein; Swiss-Prot: sp\|P57997\|IF2C_PHAVU Translation initiation factor IF-2, chloroplastic; TrEMBL-Plants: tr\|V7BXF4\|V7BXF4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0142900	Domains Coil G3DSA:2.40.30.10 G3DSA:3.40.50.10050 G3DSA:3.40.50.300 IPR000178 IPR000795 IPR005225 IPR009000 IPR015760 IPR023115 IPR027417 IPR036925 MF_00100_B PF00009 PF11987 PR00315 PS01176 PS51722 PTHR43381 PTHR43381:SF5 SSF50447 SSF52156 SSF52540 TIGR00231 TIGR00487 cd01887 cd03692 cd03702 mobidb-lite	29
LotjaGi5g1v0291500.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Translation initiation factor if-2, putative; TAIR: AT1G76810.1 eukaryotic translation initiation factor 2 (eIF-2) family protein; Swiss-Prot: sp\|Q10251\|IF2P_SCHPO Eukaryotic translation initiation factor 5B; TrEMBL-Plants: tr\|V7BF46\|V7BF46_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0291500	Domains Coil G3DSA:2.40.30.10 G3DSA:3.40.50.10050 G3DSA:3.40.50.300 IPR000795 IPR004161 IPR005225 IPR009000 IPR015760 IPR023115 IPR027417 IPR036925 PF00009 PF03144 PF11987 PR00315 PS51722 PTHR43381 PTHR43381:SF11 SSF50447 SSF52156 SSF52540 TIGR00231 cd01887 cd03703 cd16266 mobidb-lite	27
LotjaGi5g1v0291500.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Translation initiation factor if-2, putative; TAIR: AT1G76810.1 eukaryotic translation initiation factor 2 (eIF-2) family protein; Swiss-Prot: sp\|Q10251\|IF2P_SCHPO Eukaryotic translation initiation factor 5B; TrEMBL-Plants: tr\|V7BF46\|V7BF46_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0291500	Domains Coil G3DSA:2.40.30.10 G3DSA:3.40.50.10050 G3DSA:3.40.50.300 IPR000795 IPR004161 IPR005225 IPR009000 IPR015760 IPR023115 IPR027417 IPR036925 PF00009 PF03144 PF11987 PR00315 PS51722 PTHR43381 PTHR43381:SF11 SSF50447 SSF52156 SSF52540 TIGR00231 cd01887 cd03703 cd16266 mobidb-lite	27

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	8.33