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| Field | Value |
|---|---|
| Gene ID | Lj5g3v1999130 |
| Transcript ID | Lj5g3v1999130.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g62670, mitochondrial-like isoform X1 [Cicer arietinum] gi|502163082|ref|XP_004512719.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 9 | 9 | – | – | |
| SignalP | 1 | 29 | 29 | – | – | |
| Phobius | 1 | 25 | 25 | – | – | |
| Phobius | 10 | 20 | 11 | – | – | |
| Phobius | 21 | 25 | 5 | – | – | |
| Phobius | 26 | 542 | 517 | – | – | |
| PANTHER | 28 | 542 | 515 | 1.20E-271 | – | |
| PANTHER | 28 | 542 | 515 | 1.20E-271 | – | |
| SUPERFAMILY | 36 | 84 | 49 | 5.31E-06 | ||
| ProSiteProfiles | 54 | 88 | 35 | 6.708 | ||
| Pfam | 88 | 136 | 49 | 1.10E-10 | ||
| ProSiteProfiles | 89 | 123 | 35 | 9.569 | ||
| TIGRFAM | 91 | 125 | 35 | 6.20E-04 | ||
| ProSiteProfiles | 124 | 158 | 35 | 9.471 | ||
| TIGRFAM | 126 | 159 | 34 | 1.70E-04 | ||
| Pfam | 155 | 185 | 31 | 4.60E-07 | ||
| ProSiteProfiles | 159 | 193 | 35 | 9.558 | ||
| Pfam | 192 | 221 | 30 | 2.80E-09 | ||
| ProSiteProfiles | 194 | 228 | 35 | 11.148 | ||
| SUPERFAMILY | 195 | 361 | 167 | 5.31E-06 | ||
| TIGRFAM | 196 | 229 | 34 | 5.40E-07 | ||
| Pfam | 228 | 277 | 50 | 1.40E-17 | ||
| ProSiteProfiles | 229 | 263 | 35 | 11.17 | ||
| TIGRFAM | 231 | 265 | 35 | 2.30E-07 | ||
| ProSiteProfiles | 264 | 298 | 35 | 12.606 | ||
| TIGRFAM | 266 | 300 | 35 | 2.70E-08 | ||
| Gene3D | 267 | 533 | 267 | 5.10E-07 | ||
| Pfam | 298 | 347 | 50 | 5.10E-19 | ||
| ProSiteProfiles | 299 | 333 | 35 | 12.31 | ||
| TIGRFAM | 301 | 335 | 35 | 8.20E-09 | ||
| ProSiteProfiles | 334 | 368 | 35 | 12.255 | ||
| TIGRFAM | 337 | 370 | 34 | 7.90E-10 | ||
| Pfam | 368 | 417 | 50 | 4.60E-20 | ||
| ProSiteProfiles | 369 | 403 | 35 | 13.537 | ||
| TIGRFAM | 371 | 405 | 35 | 1.10E-10 | ||
| ProSiteProfiles | 404 | 438 | 35 | 13.526 | ||
| TIGRFAM | 406 | 439 | 34 | 1.30E-08 | ||
| Pfam | 435 | 464 | 30 | 4.30E-11 | ||
| ProSiteProfiles | 439 | 473 | 35 | 11.762 | ||
| TIGRFAM | 441 | 474 | 34 | 9.30E-07 | ||
| ProSiteProfiles | 474 | 508 | 35 | 13.548 | ||
| Pfam | 474 | 520 | 47 | 2.30E-15 | ||
| TIGRFAM | 477 | 510 | 34 | 4.70E-11 | ||
| ProSiteProfiles | 509 | 542 | 34 | 10.139 | ||
| TIGRFAM | 511 | 541 | 31 | 0.0016 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj5g3v1999130.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v1999130.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.