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| Field | Value |
|---|---|
| Gene ID | Lj5g3v2028360 |
| Transcript ID | Lj5g3v2028360.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: valyl-tRNA synthetase-like isoform 1 [Glycine max] gi|356535908|ref|XP_003536484.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 90 | 90 | – | – | |
| Coils | 22 | 43 | 22 | – | – | |
| PANTHER | 84 | 549 | 466 | 3.10E-298 | ||
| PANTHER | 84 | 549 | 466 | 3.10E-298 | – | |
| SUPERFAMILY | 93 | 284 | 192 | 1.27E-89 | – | |
| Gene3D | 95 | 285 | 191 | 6.60E-90 | ||
| Pfam | 106 | 537 | 432 | 1.30E-147 | ||
| PRINTS | 127 | 138 | 12 | 1.20E-15 | ||
| ProSitePatterns | 134 | 145 | 12 | – | ||
| SUPERFAMILY | 300 | 450 | 151 | 7.46E-54 | ||
| Gene3D | 305 | 445 | 141 | 9.30E-44 | ||
| PRINTS | 338 | 355 | 18 | 1.20E-15 | ||
| SUPERFAMILY | 450 | 529 | 80 | 1.27E-89 | – | |
| Gene3D | 450 | 531 | 82 | 6.60E-90 | ||
| PRINTS | 455 | 468 | 14 | 1.20E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Aminoacyl-tRNA editing activity | The hydrolysis of an incorrectly aminoacylated tRNA. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Valine-tRNA ligase activity | Catalysis of the reaction: L-valine + ATP + tRNA(Val) = L-valyl-tRNA(Val) + AMP + diphosphate + 2 H(+). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | TRNA aminoacylation for protein translation | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. | ||
| Biological process | Valyl-tRNA aminoacylation | The process of coupling valine to valyl-tRNA, catalyzed by valyl-tRNA synthetase. The valyl-tRNA synthetase is a class-I synthetase. The activated amino acid is transferred to the 2'-OH group of a valine-accetping tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification. |
Expression pattern of Lj5g3v2028360.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v2028360.1, powered by CORGI.
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