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Lj5g3v2045280.1

Overview

Field Value
Gene ID Lj5g3v2045280
Transcript ID Lj5g3v2045280.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: translation initiation factor eIF-2B subunit epsilon-like [Cicer arietinum] gi|502124571|ref|XP_004498583.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF53448
21 299 279 3.99E-40
IPR029044
PANTHER
PTHR22572:SF7
24 443 420 1.40E-191 –
CDD
cd04197
24 239 216 3.81E-94 –
Gene3D
G3DSA:3.90.550.10
24 302 279 1.70E-36
IPR029044
PANTHER
PTHR22572
24 443 420 1.40E-191 –
Pfam
PF00483
25 166 142 4.80E-10
IPR005835
SUPERFAMILY
SSF51161
268 429 162 1.14E-28
IPR011004
Gene3D
G3DSA:2.160.10.10
331 425 95 1.10E-24 –
CDD
cd05787
341 419 79 3.82E-35 –
SUPERFAMILY
SSF53448
353 369 17 3.99E-40
IPR029044
Pfam
PF00132
358 390 33 3.00E-05
IPR001451
MobiDBLite
mobidb-lite
524 555 32 – –
ProSiteProfiles
PS51363
550 721 172 27.453
IPR003307
Gene3D
G3DSA:1.25.40.180
555 722 168 1.70E-38
IPR016021
SUPERFAMILY
SSF48371
555 714 160 4.60E-32
IPR016024
CDD
cd11558
558 714 157 3.39E-44 –
SMART
SM00515
630 717 88 1.60E-20
IPR003307
Pfam
PF02020
642 721 80 5.60E-17
IPR003307

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0009058
Biological process Biosynthetic process The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
Subterm of
GO:0016779
Molecular function Nucleotidyltransferase activity Catalysis of the transfer of a nucleotidyl group to a reactant.
Subterm of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj5g3v2045280.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v2045280.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.