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Lj5g3v2237630.1

Overview

Field Value
Gene ID Lj5g3v2237630
Transcript ID Lj5g3v2237630.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description Coatomer subunit delta-3 [Medicago truncatula] gi|357454817|ref|XP_003597689.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10121:SF1
2 529 528 0 –
PANTHER
PTHR10121
2 529 528 0
IPR027059
SUPERFAMILY
SSF64356
5 142 138 2.66E-29
IPR011012
Gene3D
G3DSA:3.30.450.60
8 141 134 1.60E-20 –
MobiDBLite
mobidb-lite
158 248 91 – –
Pfam
PF00928
283 508 226 5.40E-33
IPR028565
ProSiteProfiles
PS51072
284 529 246 32.387
IPR028565
CDD
cd09254
285 526 242 3.94E-110 –
SUPERFAMILY
SSF49447
285 526 242 2.75E-24
IPR028565

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006890
Biological process Retrograde vesicle-mediated transport, Golgi to ER The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG.
Subterm of
GO:0030126
Cellular component COPI vesicle coat One of two multimeric complexes that forms a membrane vesicle coat. The mammalian COPI subunits are called alpha-, beta-, beta'-, gamma-, delta-, epsilon- and zeta-COP. Vesicles with COPI coats are found associated with Golgi membranes at steady state.
Subterm of
Part of

Genome browser

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj5g3v2237630.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v2237630.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.