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| Field | Value |
|---|---|
| Gene ID | Lj5g3v2258440 |
| Transcript ID | Lj5g3v2258440.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: lysine-specific demethylase 3B-like [Glycine max] gi|356573855|ref|XP_003555071.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 13 | 13 | – | – | |
| Phobius | 1 | 26 | 26 | – | – | |
| SignalP | 1 | 26 | 26 | – | – | |
| Phobius | 14 | 21 | 8 | – | – | |
| Phobius | 22 | 26 | 5 | – | – | |
| Phobius | 27 | 928 | 902 | – | – | |
| MobiDBLite | 35 | 72 | 38 | – | – | |
| PANTHER | 49 | 925 | 877 | 0 | – | |
| PANTHER | 49 | 925 | 877 | 0 | – | |
| MobiDBLite | 128 | 159 | 32 | – | – | |
| Pfam | 177 | 242 | 66 | 2.70E-06 | ||
| ProSiteProfiles | 182 | 229 | 48 | 9.199 | ||
| SUPERFAMILY | 503 | 682 | 180 | 5.63E-36 | – | |
| SMART | 607 | 886 | 280 | 2.70E-73 | ||
| ProSiteProfiles | 626 | 886 | 261 | 27.686 | ||
| MobiDBLite | 712 | 735 | 24 | – | – | |
| Pfam | 770 | 869 | 100 | 2.80E-15 | ||
| SUPERFAMILY | 771 | 911 | 141 | 5.63E-36 | – | |
| Gene3D | 828 | 869 | 42 | 4.00E-05 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of Lj5g3v2258440.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v2258440.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.