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| Field | Value |
|---|---|
| Gene ID | Lj5g3v2258510 |
| Transcript ID | Lj5g3v2258510.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat protein-like protein [Medicago truncatula] gi|357444861|ref|XP_003592708.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 20 | 20 | – | – | |
| PANTHER | 34 | 326 | 293 | 6.20E-267 | – | |
| PANTHER | 34 | 326 | 293 | 6.20E-267 | – | |
| ProSiteProfiles | 116 | 150 | 35 | 8.122 | ||
| TIGRFAM | 123 | 152 | 30 | 2.80E-04 | ||
| Pfam | 124 | 148 | 25 | 0.0015 | ||
| ProSiteProfiles | 152 | 186 | 35 | 7.673 | ||
| ProSiteProfiles | 187 | 221 | 35 | 10.26 | ||
| TIGRFAM | 189 | 220 | 32 | 8.40E-06 | ||
| Pfam | 190 | 218 | 29 | 0.0021 | ||
| ProSiteProfiles | 222 | 255 | 34 | 6.27 | ||
| TIGRFAM | 224 | 256 | 33 | 0.0011 | ||
| Pfam | 227 | 252 | 26 | 0.046 | ||
| ProSiteProfiles | 256 | 290 | 35 | 11.674 | ||
| Pfam | 259 | 304 | 46 | 1.70E-09 | ||
| TIGRFAM | 259 | 292 | 34 | 2.90E-08 | ||
| ProSiteProfiles | 291 | 325 | 35 | 13.351 | ||
| TIGRFAM | 294 | 327 | 34 | 6.10E-10 | ||
| ProSiteProfiles | 359 | 393 | 35 | 8.396 | ||
| TIGRFAM | 362 | 393 | 32 | 3.90E-05 | ||
| Pfam | 362 | 389 | 28 | 7.00E-05 | ||
| Gene3D | 372 | 497 | 126 | 7.80E-06 | ||
| Pfam | 407 | 438 | 32 | 2.20E-05 | ||
| ProSiteProfiles | 410 | 444 | 35 | 10.391 | ||
| PANTHER | 411 | 483 | 73 | 6.20E-267 | – | |
| PANTHER | 411 | 483 | 73 | 6.20E-267 | – | |
| TIGRFAM | 413 | 445 | 33 | 2.20E-06 | ||
| Pfam | 444 | 493 | 50 | 1.60E-14 | ||
| ProSiteProfiles | 445 | 479 | 35 | 13.702 | ||
| TIGRFAM | 448 | 480 | 33 | 6.30E-09 | ||
| ProSiteProfiles | 480 | 514 | 35 | 9.065 | ||
| TIGRFAM | 482 | 515 | 34 | 2.10E-05 | ||
| ProSiteProfiles | 515 | 549 | 35 | 7.509 | ||
| ProSiteProfiles | 550 | 584 | 35 | 9.602 | ||
| TIGRFAM | 552 | 586 | 35 | 8.00E-04 | ||
| Pfam | 552 | 581 | 30 | 0.17 | ||
| Gene3D | 553 | 680 | 128 | 7.80E-06 | ||
| PANTHER | 554 | 766 | 213 | 6.20E-267 | – | |
| PANTHER | 554 | 766 | 213 | 6.20E-267 | – | |
| Pfam | 584 | 633 | 50 | 1.50E-17 | ||
| ProSiteProfiles | 585 | 619 | 35 | 12.989 | ||
| TIGRFAM | 587 | 621 | 35 | 2.30E-08 | ||
| ProSiteProfiles | 620 | 654 | 35 | 11.707 | ||
| TIGRFAM | 622 | 656 | 35 | 7.20E-08 | ||
| Pfam | 654 | 703 | 50 | 9.10E-15 | ||
| ProSiteProfiles | 655 | 689 | 35 | 13.384 | ||
| TIGRFAM | 657 | 690 | 34 | 3.30E-10 | ||
| ProSiteProfiles | 690 | 724 | 35 | 9.81 | ||
| TIGRFAM | 694 | 726 | 33 | 1.20E-04 | ||
| Pfam | 714 | 753 | 40 | 1.30E-04 | ||
| ProSiteProfiles | 725 | 759 | 35 | 9.756 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj5g3v2258510.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj5g3v2258510.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.