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Lj5g3v2267350.1

Overview

Field Value
Gene ID Lj5g3v2267350
Transcript ID Lj5g3v2267350.1
Lotus japonicus genome version MG20 v3.0
Description Pre-mRNA splicing factor ATP-dependent RNA helicase-like protein [Medicago truncatula] gi|357463271|ref|XP_003601917.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
CDD
cd00105
4 46 43 0.0014216 –
PANTHER
PTHR11685
110 334 225 1.10E-42
IPR031127
PANTHER
PTHR11685:SF112
110 334 225 1.10E-42 –
Gene3D
G3DSA:3.30.40.10
127 200 74 9.30E-08
IPR013083
SUPERFAMILY
SSF57850
140 204 65 2.65E-09 –
ProSiteProfiles
PS50089
141 183 43 8.89
IPR001841
CDD
cd00162
141 168 28 0.00141835 –
ProSitePatterns
PS00518
157 166 10 –
IPR017907
SMART
SM00647
209 273 65 1.20E-10
IPR002867
SUPERFAMILY
SSF57850
219 279 61 2.58E-07 –
Pfam
PF01485
220 273 54 5.10E-09
IPR002867
SMART
SM00647
274 332 59 0.54
IPR002867
Pfam
PF01485
285 330 46 1.40E-05
IPR002867
SUPERFAMILY
SSF57850
296 331 36 1.41E-09 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004842
Molecular function Ubiquitin-protein transferase activity Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
Subterm of
GO:0016567
Biological process Protein ubiquitination The process in which one or more ubiquitin groups are added to a protein.
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj5g3v2267350.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v2267350.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.