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Lj5g3v2288940.1

Overview

Field Value
Gene ID Lj5g3v2288940
Transcript ID Lj5g3v2288940.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3-like [Glycine max] gi|356495750|ref|XP_003516736.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 223 223 – –
PANTHER
PTHR14212
3 73 71 9.00E-267
IPR027104
PANTHER
PTHR14212
203 290 88 9.00E-267
IPR027104
Coils
Coil
231 251 21 – –
MobiDBLite
mobidb-lite
255 282 28 – –
PANTHER
PTHR14212
313 806 494 9.00E-267
IPR027104
Pfam
PF08572
419 648 230 9.50E-63
IPR013881
MobiDBLite
mobidb-lite
549 572 24 – –
Coils
Coil
565 587 23 – –
Pfam
PF06544
673 797 125 6.00E-41
IPR010541

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000398
Biological process MRNA splicing, via spliceosome The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
Subterm of
GO:0046540
Cellular component U4/U6 x U5 tri-snRNP complex A ribonucleoprotein complex formed by the association of the U4/U6 and U5 small nuclear ribonucleoproteins.
Subterm of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj5g3v2288940.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v2288940.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.