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| Field | Value |
|---|---|
| Gene ID | Lj6g3v0082160 |
| Transcript ID | Lj6g3v0082160.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: U-box domain-containing protein 72 [Glycine max] gi|356575233|ref|XP_003555746.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 519 | 519 | 1.40E-201 | – | |
| SUPERFAMILY | 1 | 53 | 53 | 1.15E-12 | – | |
| Gene3D | 1 | 57 | 57 | 6.00E-23 | ||
| SMART | 1 | 66 | 66 | 8.40E-21 | ||
| ProSiteProfiles | 1 | 70 | 70 | 28.113 | ||
| Pfam | 65 | 131 | 67 | 3.40E-31 | ||
| Coils | 115 | 135 | 21 | – | – | |
| SMART | 208 | 250 | 43 | 3.8 | ||
| SUPERFAMILY | 218 | 512 | 295 | 2.98E-61 | ||
| ProSiteProfiles | 218 | 522 | 305 | 36.253 | ||
| Gene3D | 220 | 512 | 293 | 1.60E-67 | ||
| CDD | 224 | 512 | 289 | 9.97E-54 | – | |
| SMART | 253 | 292 | 40 | 3.00E-08 | ||
| Pfam | 254 | 291 | 38 | 5.00E-07 | ||
| ProSiteProfiles | 260 | 292 | 33 | 14.418 | ||
| SMART | 298 | 337 | 40 | 6.00E-06 | ||
| Pfam | 300 | 335 | 36 | 0.18 | ||
| ProSiteProfiles | 305 | 346 | 42 | 9.339 | ||
| SMART | 340 | 382 | 43 | 0.001 | ||
| ProSiteProfiles | 350 | 391 | 42 | 12.213 | ||
| Pfam | 358 | 382 | 25 | 0.13 | ||
| ProSitePatterns | 369 | 383 | 15 | – | ||
| SMART | 385 | 423 | 39 | 3.20E-07 | ||
| Pfam | 388 | 423 | 36 | 0.0014 | ||
| ProSiteProfiles | 392 | 432 | 41 | 9.907 | ||
| SMART | 426 | 465 | 40 | 32 | ||
| SMART | 472 | 513 | 42 | 0.0067 | ||
| Pfam | 484 | 512 | 29 | 0.0018 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of Lj6g3v0082160.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v0082160.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.