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| Field | Value |
|---|---|
| Gene ID | Lj6g3v0143880 |
| Transcript ID | Lj6g3v0143880.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic-like [Cicer arietinum] gi|502170587|ref|XP_004514863.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 26 | 26 | 6.478 | ||
| PANTHER | 6 | 222 | 217 | 2.50E-297 | – | |
| PANTHER | 6 | 222 | 217 | 2.50E-297 | – | |
| ProSiteProfiles | 27 | 57 | 31 | 6.73 | ||
| SUPERFAMILY | 58 | 234 | 177 | 2.16E-05 | ||
| ProSiteProfiles | 62 | 96 | 35 | 8.649 | ||
| Pfam | 64 | 94 | 31 | 0.07 | ||
| ProSiteProfiles | 97 | 131 | 35 | 8.912 | ||
| Pfam | 100 | 129 | 30 | 0.0097 | ||
| TIGRFAM | 100 | 133 | 34 | 0.0012 | ||
| Pfam | 131 | 179 | 49 | 3.10E-11 | ||
| ProSiteProfiles | 132 | 166 | 35 | 9.635 | ||
| TIGRFAM | 134 | 167 | 34 | 4.00E-04 | ||
| Gene3D | 165 | 252 | 88 | 5.20E-11 | ||
| ProSiteProfiles | 167 | 201 | 35 | 11.181 | ||
| TIGRFAM | 170 | 203 | 34 | 2.60E-06 | ||
| Pfam | 189 | 242 | 54 | 5.30E-09 | ||
| ProSiteProfiles | 202 | 236 | 35 | 11.389 | ||
| TIGRFAM | 204 | 237 | 34 | 6.80E-06 | ||
| ProSiteProfiles | 237 | 271 | 35 | 11.016 | ||
| TIGRFAM | 240 | 272 | 33 | 2.50E-06 | ||
| Pfam | 244 | 269 | 26 | 0.0014 | ||
| Pfam | 271 | 319 | 49 | 1.20E-13 | ||
| PANTHER | 271 | 523 | 253 | 2.50E-297 | – | |
| PANTHER | 271 | 523 | 253 | 2.50E-297 | – | |
| ProSiteProfiles | 272 | 306 | 35 | 10.797 | ||
| TIGRFAM | 274 | 308 | 35 | 1.20E-05 | ||
| SUPERFAMILY | 306 | 348 | 43 | 2.16E-05 | ||
| ProSiteProfiles | 307 | 341 | 35 | 10.589 | ||
| TIGRFAM | 309 | 343 | 35 | 5.40E-06 | ||
| Gene3D | 310 | 474 | 165 | 5.20E-11 | ||
| ProSiteProfiles | 342 | 376 | 35 | 10.556 | ||
| TIGRFAM | 344 | 377 | 34 | 6.10E-05 | ||
| Pfam | 344 | 372 | 29 | 0.02 | ||
| Pfam | 377 | 425 | 49 | 4.50E-15 | ||
| ProSiteProfiles | 377 | 411 | 35 | 11.915 | ||
| TIGRFAM | 380 | 413 | 34 | 1.20E-06 | ||
| SUPERFAMILY | 381 | 438 | 58 | 2.16E-05 | ||
| ProSiteProfiles | 412 | 446 | 35 | 13.45 | ||
| TIGRFAM | 414 | 447 | 34 | 7.90E-10 | ||
| Pfam | 435 | 490 | 56 | 9.40E-10 | ||
| ProSiteProfiles | 447 | 481 | 35 | 12.419 | ||
| TIGRFAM | 450 | 482 | 33 | 5.80E-09 | ||
| MobiDBLite | 586 | 606 | 21 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj6g3v0143880.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v0143880.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.