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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1049130 |
| Transcript ID | Lj6g3v1049130.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable cyclic nucleotide-gated ion channel 17-like [Glycine max] gi|356508396|ref|XP_003522943.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 89 | 89 | – | – | |
| PANTHER | 8 | 279 | 272 | 0 | – | |
| PANTHER | 8 | 279 | 272 | 0 | – | |
| SUPERFAMILY | 81 | 279 | 199 | 1.29E-27 | – | |
| Pfam | 87 | 411 | 325 | 9.80E-29 | ||
| TMHMM | 90 | 109 | 20 | – | – | |
| Phobius | 90 | 108 | 19 | – | – | |
| Phobius | 109 | 127 | 19 | – | – | |
| TMHMM | 124 | 143 | 20 | – | – | |
| Gene3D | 126 | 278 | 153 | 5.70E-14 | – | |
| Phobius | 128 | 147 | 20 | – | – | |
| PRINTS | 145 | 154 | 10 | 3.40E-05 | ||
| Phobius | 148 | 181 | 34 | – | – | |
| Phobius | 182 | 201 | 20 | – | – | |
| TMHMM | 182 | 204 | 23 | – | – | |
| Phobius | 202 | 212 | 11 | – | – | |
| Phobius | 213 | 232 | 20 | – | – | |
| TMHMM | 214 | 231 | 18 | – | – | |
| Phobius | 233 | 252 | 20 | – | – | |
| TMHMM | 252 | 274 | 23 | – | – | |
| Phobius | 253 | 274 | 22 | – | – | |
| PRINTS | 262 | 272 | 11 | 3.40E-05 | ||
| Phobius | 275 | 376 | 102 | – | – | |
| PANTHER | 329 | 657 | 329 | 0 | – | |
| PANTHER | 329 | 657 | 329 | 0 | – | |
| Gene3D | 347 | 407 | 61 | 5.70E-14 | – | |
| SUPERFAMILY | 347 | 407 | 61 | 1.29E-27 | – | |
| TMHMM | 377 | 399 | 23 | – | – | |
| Phobius | 377 | 399 | 23 | – | – | |
| PRINTS | 380 | 391 | 12 | 3.40E-05 | ||
| PRINTS | 398 | 407 | 10 | 3.40E-05 | ||
| Phobius | 400 | 657 | 258 | – | – | |
| Gene3D | 408 | 476 | 69 | 1.20E-14 | – | |
| SUPERFAMILY | 415 | 607 | 193 | 1.44E-36 | ||
| PRINTS | 448 | 455 | 8 | 3.40E-05 | ||
| Gene3D | 483 | 601 | 119 | 5.00E-25 | ||
| ProSiteProfiles | 485 | 615 | 131 | 10.971 | ||
| SMART | 485 | 616 | 132 | 3.60E-12 | ||
| CDD | 485 | 616 | 132 | 1.87E-17 | – | |
| Pfam | 508 | 595 | 88 | 5.80E-08 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ion channel activity | Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size). | ||
| Molecular function | Voltage-gated potassium channel activity | Enables the transmembrane transfer of a potassium ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. | ||
| Biological process | Ion transport | The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Biological process | Potassium ion transport | The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj6g3v1049130.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1049130.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.