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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1077270 |
| Transcript ID | Lj6g3v1077270.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: cellulose synthase A catalytic subunit 7 [UDP]-forming] gi|356517040|ref|XP_003527198.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 305 | 305 | – | – | |
| Gene3D | 79 | 169 | 91 | 3.20E-36 | ||
| SUPERFAMILY | 79 | 165 | 87 | 2.12E-37 | – | |
| Pfam | 85 | 162 | 78 | 5.90E-42 | ||
| ProSiteProfiles | 95 | 141 | 47 | 8.772 | ||
| PANTHER | 132 | 695 | 564 | 0 | – | |
| PANTHER | 132 | 695 | 564 | 0 | – | |
| MobiDBLite | 194 | 214 | 21 | – | – | |
| Phobius | 306 | 323 | 18 | – | – | |
| TMHMM | 311 | 328 | 18 | – | – | |
| Phobius | 324 | 334 | 11 | – | – | |
| TMHMM | 335 | 354 | 20 | – | – | |
| Phobius | 335 | 354 | 20 | – | – | |
| Phobius | 355 | 834 | 480 | – | – | |
| Pfam | 388 | 1090 | 703 | 0 | ||
| SUPERFAMILY | 402 | 445 | 44 | 1.46E-11 | ||
| SUPERFAMILY | 556 | 677 | 122 | 1.46E-11 | ||
| PANTHER | 719 | 1081 | 363 | 0 | – | |
| PANTHER | 719 | 1081 | 363 | 0 | – | |
| SUPERFAMILY | 774 | 882 | 109 | 1.46E-11 | ||
| Phobius | 835 | 855 | 21 | – | – | |
| Phobius | 856 | 874 | 19 | – | – | |
| TMHMM | 873 | 895 | 23 | – | – | |
| Phobius | 875 | 895 | 21 | – | – | |
| Phobius | 896 | 906 | 11 | – | – | |
| TMHMM | 907 | 929 | 23 | – | – | |
| Phobius | 907 | 925 | 19 | – | – | |
| Phobius | 926 | 944 | 19 | – | – | |
| TMHMM | 944 | 966 | 23 | – | – | |
| Phobius | 945 | 965 | 21 | – | – | |
| Phobius | 966 | 985 | 20 | – | – | |
| Phobius | 986 | 1007 | 22 | – | – | |
| TMHMM | 991 | 1013 | 23 | – | – | |
| Phobius | 1008 | 1026 | 19 | – | – | |
| TMHMM | 1023 | 1045 | 23 | – | – | |
| Phobius | 1027 | 1045 | 19 | – | – | |
| Phobius | 1046 | 1056 | 11 | – | – | |
| Phobius | 1057 | 1077 | 21 | – | – | |
| TMHMM | 1058 | 1077 | 20 | – | – | |
| Phobius | 1078 | 1096 | 19 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Cellulose synthase (UDP-forming) activity | Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1). | ||
| Biological process | Cellulose biosynthetic process | The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. |
Expression pattern of Lj6g3v1077270.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1077270.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.