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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1077850 |
| Transcript ID | Lj6g3v1077850.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable cyclic nucleotide-gated ion channel 5-like [Glycine max] gi|356543300|ref|XP_003540100.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 113 | 113 | – | – | |
| PANTHER | 9 | 301 | 293 | 0 | – | |
| PANTHER | 9 | 301 | 293 | 0 | – | |
| SUPERFAMILY | 102 | 301 | 200 | 2.22E-35 | – | |
| TMHMM | 107 | 129 | 23 | – | – | |
| Pfam | 110 | 433 | 324 | 1.50E-34 | ||
| Gene3D | 111 | 300 | 190 | 9.60E-24 | – | |
| Phobius | 114 | 135 | 22 | – | – | |
| Phobius | 136 | 146 | 11 | – | – | |
| Phobius | 147 | 165 | 19 | – | – | |
| TMHMM | 149 | 171 | 23 | – | – | |
| Phobius | 166 | 202 | 37 | – | – | |
| PRINTS | 167 | 176 | 10 | 1.20E-05 | ||
| TMHMM | 203 | 220 | 18 | – | – | |
| Phobius | 203 | 223 | 21 | – | – | |
| Phobius | 224 | 234 | 11 | – | – | |
| Phobius | 235 | 254 | 20 | – | – | |
| Phobius | 255 | 274 | 20 | – | – | |
| TMHMM | 275 | 297 | 23 | – | – | |
| Phobius | 275 | 296 | 22 | – | – | |
| Phobius | 297 | 402 | 106 | – | – | |
| PANTHER | 349 | 733 | 385 | 0 | – | |
| PANTHER | 349 | 733 | 385 | 0 | – | |
| SUPERFAMILY | 369 | 429 | 61 | 2.22E-35 | – | |
| Gene3D | 369 | 429 | 61 | 9.60E-24 | – | |
| PRINTS | 376 | 393 | 18 | 1.20E-05 | ||
| PRINTS | 402 | 413 | 12 | 1.20E-05 | ||
| Phobius | 403 | 421 | 19 | – | – | |
| TMHMM | 403 | 425 | 23 | – | – | |
| PRINTS | 420 | 429 | 10 | 1.20E-05 | ||
| Phobius | 422 | 733 | 312 | – | – | |
| SUPERFAMILY | 437 | 627 | 191 | 7.86E-35 | ||
| Gene3D | 441 | 498 | 58 | 1.10E-10 | – | |
| PRINTS | 470 | 477 | 8 | 1.20E-05 | ||
| Gene3D | 505 | 623 | 119 | 9.30E-29 | ||
| ProSiteProfiles | 507 | 637 | 131 | 13.435 | ||
| SMART | 507 | 638 | 132 | 9.30E-13 | ||
| CDD | 507 | 638 | 132 | 1.03E-17 | – | |
| Pfam | 529 | 617 | 89 | 1.00E-07 | ||
| ProSiteProfiles | 643 | 672 | 30 | 6.595 | ||
| MobiDBLite | 713 | 733 | 21 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ion channel activity | Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size). | ||
| Molecular function | Voltage-gated potassium channel activity | Enables the transmembrane transfer of a potassium ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Ion transport | The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Biological process | Potassium ion transport | The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj6g3v1077850.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1077850.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.