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Lj6g3v1078510.1

Overview

Field Value
Gene ID Lj6g3v1078510
Transcript ID Lj6g3v1078510.1
Lotus japonicus genome version MG20 v3.0
Description fiber NTGP1-related protein [Gossypium barbadense] gi|35187452|gb|AAQ84317.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR21136:SF106
42 245 204 2.00E-117 –
PANTHER
PTHR21136
42 245 204 2.00E-117 –
Gene3D
G3DSA:3.30.450.50
59 193 135 4.20E-59
IPR010908
SUPERFAMILY
SSF64356
59 197 139 7.32E-43
IPR011012
ProSiteProfiles
PS50859
65 181 117 22.18
IPR010908
SMART
SM01270
103 185 83 1.70E-24
IPR010908
Pfam
PF13774
106 172 67 1.70E-11
IPR010908
SUPERFAMILY
SSF58038
191 245 55 4.92E-16 –
Gene3D
G3DSA:1.20.5.110
194 245 52 8.80E-22 –
Pfam
PF00957
195 245 51 2.70E-12
IPR001388
CDD
cd15867
195 245 51 7.13E-31 –
ProSiteProfiles
PS50892
197 245 49 14.894
IPR001388
ProSitePatterns
PS00417
215 234 20 –
IPR001388

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0016021
Cellular component Integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Subterm of
GO:0016192
Biological process Vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj6g3v1078510.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1078510.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.