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Lj6g3v1088990.1

Overview

Field Value
Gene ID Lj6g3v1088990
Transcript ID Lj6g3v1088990.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: homeobox protein knotted-1-like LET12-like isoform X1 [Cicer arietinum] gi|502167116|ref|XP_004514060.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11850:SF127
1 349 349 4.70E-206 –
PANTHER
PTHR11850
1 349 349 4.70E-206 –
SMART
SM01255
72 117 46 3.80E-07
IPR005540
Pfam
PF03790
84 115 32 2.60E-10
IPR005540
SMART
SM01256
124 180 57 4.60E-26
IPR005541
Pfam
PF03791
130 179 50 6.10E-19
IPR005541
MobiDBLite
mobidb-lite
179 201 23 – –
SMART
SM01188
238 259 22 5.10E-04
IPR005539
Pfam
PF03789
238 259 22 1.10E-05
IPR005539
ProSiteProfiles
PS51213
238 258 21 9.969
IPR005539
ProSiteProfiles
PS50071
258 321 64 11.742
IPR001356
SMART
SM00389
260 325 66 2.20E-10
IPR001356
SUPERFAMILY
SSF46689
260 325 66 3.34E-16
IPR009057
CDD
cd00086
261 322 62 5.30E-11 –
Gene3D
G3DSA:1.10.10.60
265 322 58 1.40E-24
IPR009057
Pfam
PF05920
278 317 40 9.10E-18
IPR008422
MobiDBLite
mobidb-lite
315 349 35 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj6g3v1088990.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1088990.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.